PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_172720_tdrs.t1
Common NameSOVF_172720
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family GRAS
Protein Properties Length: 551aa    MW: 62220.6 Da    PI: 4.5143
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_172720_tdrs.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4171.7e-1271805512374
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                        ++lL++cA  +s+g++e+a +++++l++ +s +gdp qR+aay++e+Laarla+s++ lykal+++e +   s e+laa+++++ev+P++kf
  Sp_172720_tdrs.t1 180 KQLLFDCAAIISEGKFEQAASMINELRQVVSIQGDPPQRIAAYMVEGLAARLASSGKVLYKALRCKEPP---SFEKLAAMQVLFEVCPCFKF 268
                        689*****************************************************************9...9******************* PP

               GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlva 183
                        ++++aN+aI+ea++ e++vHiiDfdi+qG Q+++L+++La+ ++++ +lR+Tgv++pes+      l+++g+rL+ +Ae  g+pfef++ + 
  Sp_172720_tdrs.t1 269 GFMAANEAIMEAIKYEKKVHIIDFDINQGNQYINLIRSLAKVRGKSIHLRLTGVDDPESVqrPIGGLKNIGQRLEVLAELEGLPFEFKA-LP 359
                        **********************************************************99888899***********************.59 PP

               GRAS 184 krledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                        +r+  +++e+L+ ++ +Eal+Vn+++ lh+++desvs+ + rd++L++vksl+Pk+v++veq++++n+++Fl rf+ea +yysa+f+sl+a+
  Sp_172720_tdrs.t1 360 TRTPLVTPEMLDYREgEEALVVNFAFLLHHMPDESVSTINLRDQLLRMVKSLNPKLVTIVEQDVNTNTTPFLPRFFEAYSYYSAVFESLDAT 451
                        9**************899************************************************************************** PP

               GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366
                        lpres+eri+vE+++l+r+ivnvvaceg+er+er e ++kWr+r+e+aGF++ p+++++ + ++ l+   + d ++++ee ++l++ W+d++
  Sp_172720_tdrs.t1 452 LPRESQERINVEKQCLARDIVNVVACEGEERVERYEVAGKWRARMEMAGFRSCPMKQNVSEMIRGLIVSQYCDRFKLNEEMDALLFAWEDKS 543
                        ********************************************************************999888****************** PP

               GRAS 367 LvsvSaWr 374
                        Lv++SaW+
  Sp_172720_tdrs.t1 544 LVVASAWK 551
                        *******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.486153531IPR005202Transcription factor GRAS
PfamPF035145.8E-125180551IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MSTAYGTPRL YALQGSGKSS GLSTQLYGSE KHNVKYMTET FNSPSYDPQF FLDSPSEEII  60
HPPSSTSNQF DSSYQTNYEL DYFICQSPEP IEYDEGMIKL KLQELEHALL DDDEEDGVDE  120
VVIGPEQPNN MEIDEDWAGS LRSMMVYDSP KESTSSESSN LSSISNKDEA LPLPSSRSTK  180
QLLFDCAAII SEGKFEQAAS MINELRQVVS IQGDPPQRIA AYMVEGLAAR LASSGKVLYK  240
ALRCKEPPSF EKLAAMQVLF EVCPCFKFGF MAANEAIMEA IKYEKKVHII DFDINQGNQY  300
INLIRSLAKV RGKSIHLRLT GVDDPESVQR PIGGLKNIGQ RLEVLAELEG LPFEFKALPT  360
RTPLVTPEML DYREGEEALV VNFAFLLHHM PDESVSTINL RDQLLRMVKS LNPKLVTIVE  420
QDVNTNTTPF LPRFFEAYSY YSAVFESLDA TLPRESQERI NVEKQCLARD IVNVVACEGE  480
ERVERYEVAG KWRARMEMAG FRSCPMKQNV SEMIRGLIVS QYCDRFKLNE EMDALLFAWE  540
DKSLVVASAW K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A4e-5918655025377Protein SCARECROW
5b3h_D4e-5918655025377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021841798.10.0scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A0K9QJA70.0A0A0K9QJA7_SPIOL; Uncharacterized protein
STRINGXP_010692620.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]