PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_172870_ahnk.t1

Common Name

SOVF_172870

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

FAR1

Protein Properties

Length: 220aa MW: 24423.8 Da PI: 8.8951

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_172870_ahnk.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	37.2	9.4e-12	76	179	2	88
FAR1 2 fYneYAkevGFsvrkskskkskrnge...itkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekdgkwe 77 +++Y+k++GF v++++ ++s++ ge ++ ++C + g+++ + ++ + +r+++++++gC ++ +++g+we Sp_172870_ahnk.t1 76 HFRKYGKQCGFGVVRAYGNYSRKAGEkrtLRSYVWKCECGGEPDLRFRTkgvkakgamitapGVLDKRPSKSKKCGCPVHMYAVADNSGTWE 167 689**********998888555441115677889***99998899999*999889999******************** PP FAR1 78 vtkleleH.nHe 88 v k + eH nH+ Sp_172870_ahnk.t1 168 VRKAVVEHlNHK 179 ******8886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.4E-9	76	179	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
VVSDWLDAND DDILVPCGDA ELGNFDEVGK LGDESLCRTP SEKILNCEGK GIVEEEVLVT 60 PVVGMTFSSW DRADEHFRKY GKQCGFGVVR AYGNYSRKAG EKRTLRSYVW KCECGGEPDL 120 RFRTKGVKAK GAMITAPGVL DKRPSKSKKC GCPVHMYAVA DNSGTWEVRK AVVEHLNHKP 180 TPLKSRYISM YRRDSITSIV RRRLFNGVGG GSKISNQELS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021851001.1	1e-154	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A0K9QKX2	1e-161	A0A0K9QKX2_SPIOL; Uncharacterized protein (Fragment)