PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_172920_ctky.t1
Common NameSOVF_172920
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family ERF
Protein Properties Length: 413aa    MW: 46809.1 Da    PI: 6.5223
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_172920_ctky.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.5e-19197247256
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  Sp_172920_ctky.t1 197 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAALAYDREAFKLRGE 247
                        59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.58E-34196256No hitNo description
Gene3DG3DSA:3.30.730.104.2E-32197255IPR001471AP2/ERF domain
SMARTSM003802.7E-40197260IPR001471AP2/ERF domain
PROSITE profilePS5103222.932197254IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-23197255IPR016177DNA-binding domain
PRINTSPR003678.1E-11198209IPR001471AP2/ERF domain
PfamPF008472.1E-12198247IPR001471AP2/ERF domain
PRINTSPR003678.1E-11220236IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:2000070Biological Processregulation of response to water deprivation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MSSSTSRKAK EMNNETKNVA KMKWDREKGK GHPYQLQQQQ QWMPVFDEAT TAAGGRPFKK  60
TRSPERQFIP PSQSLVQPFN PFPCTNTCSK IAFPFPFDCS SNQNNQPQFP DLNTQTIPEQ  120
QQQQQQMISF NQGCGYQYQY QPTESNPQMQ QLQYWSEALN LSPRGKLMMM NRFSTQGFGQ  180
QMPQGGNPVS AISTTKLYRG VRQRHWGKWV AEIRLPRNRT RLWLGTFDTA EDAALAYDRE  240
AFKLRGENAR LNFPELFLNK GTTDSSCNQP QEMETPPQPP PPPLPSIPPP PFPVEVKADE  300
SSGATSSDMS VIRDPSQTVG EGGLETSDLA WKEMTDAWFN AIPAGWGPGS PLWDTFDPNN  360
LLLQHNYPFK LNLSSSDYQQ DQHQQEFFVS SSSSSSFSPS SCPMRPFFSK DQD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-21196261469ATERF1
3gcc_A2e-21196261469ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021858832.10.0ethylene-responsive transcription factor ERF054-like
TrEMBLA0A0K9QL680.0A0A0K9QL68_SPIOL; Uncharacterized protein
STRINGXP_010689679.11e-157(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.11e-55ERF family protein