PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_173810_tasc.t1
Common NameSOVF_173810
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family GRF
Protein Properties Length: 391aa    MW: 43239.1 Da    PI: 8.3792
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_173810_tasc.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC789.1e-2590134145
                WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                        d+epgrCrRtDGKkWRCs+++++++k+CErH+hrg++rsrk++e+
  Sp_173810_tasc.t1  90 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVES 134
                        79****************************************997 PP
2QLQ60.45.1e-212357236
                QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                       +FTa+Q+q+L++Q+l+yKy+aa+ P+Pp+Ll+ ++
  Sp_173810_tasc.t1 23 PFTATQWQELEHQALIYKYMAAGIPIPPDLLFTVK 57
                       8*****************************98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009513.8E-122258IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.812358IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.6E-152356IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.41790134IPR014977WRC domain
PfamPF088791.4E-2091133IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0030912Biological Processresponse to deep water
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MSTATASPVG VGVGVGGGRS KFPFTATQWQ ELEHQALIYK YMAAGIPIPP DLLFTVKRSL  60
DSSLSTKLFP YQTSPLGWNP YQMGYGKKID PEPGRCRRTD GKKWRCSKEA YPDSKYCERH  120
MHRGKNRSRK PVESSLSSPL NTTNNNSCSN NNNSATNSPL SVAASLTNLS KNQNQNPSSV  180
SSTSLFSSLP SSDSSCNNNN SSNSHLLYPH SSSPYTNKDY NRDRYYQGLK EEVGEHAFFT  240
ESSGSSMRGF SGSSMEDTWQ LGNLDHHQQQ SKQGGGCGGG GGGYPNYLQQ LQTNNTAAAA  300
AKQQQQQEKQ CYIWGRDFNC DLSMKVEDER ENNFNEKTTH HFFDEWPIKG GGRGGRDSSW  360
HDSSSTTQLS ISIPSSNSHH HDFFLSNSRD S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021864714.10.0growth-regulating factor 1-like
TrEMBLA0A0K9QKX60.0A0A0K9QKX6_SPIOL; Uncharacterized protein
STRINGXP_010666262.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.15e-58growth-regulating factor 5