PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_173840_apcs.t1
Common NameSOVF_173840
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family C3H
Protein Properties Length: 471aa    MW: 49951.9 Da    PI: 8.0986
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_173840_apcs.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.38.2e-114268127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                       ++++ C +++rtG+C y drC+F+H++
  Sp_173840_apcs.t1 42 PGEPDCIYYLRTGFCGYADRCRFNHPR 68
                       5789*********************96 PP
2zf-CCCH37.15.2e-1293117327
                        S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                        +++C++f+rtG Ck+G +Ck++H++
  Sp_173840_apcs.t1  93 QPICQYFMRTGSCKFGTSCKYHHPR 117
                        799********************96 PP
3zf-CCCH30.75.3e-10138163227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                        ++++C+++ +tG+Ck+G +CkF+H+p
  Sp_173840_apcs.t1 138 GEKECSYYIKTGQCKFGMTCKFHHPP 163
                        7899********************97 PP
4zf-CCCH36.48.8e-12299324126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        +++++C+++++tG Ck+G++Ck++H+
  Sp_173840_apcs.t1 299 PGQPECQHYLKTGDCKFGSSCKYNHP 324
                        5789*********************8 PP
5zf-CCCH35.81.3e-11345371127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        ++t+ C+++a+ G Ck+G++CkF H++
  Sp_173840_apcs.t1 345 PGTPTCSYYAQHGVCKFGPTCKFDHPM 371
                        68***********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.7794169IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-54168IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-74368IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.5E-64669IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-54768IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-690117IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.9290118IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-993117IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-693118IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-595117IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.587136164IPR000571Zinc finger, CCCH-type
SMARTSM003569.6E-4136163IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-5138163IPR000571Zinc finger, CCCH-type
PfamPF006428.7E-7138163IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.929298326IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-5298325IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-9300324IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5302325IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-4304324IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.418344372IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-6344374IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-6344371IPR000571Zinc finger, CCCH-type
PfamPF006429.8E-9345371IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-4349369IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MERERTHSDP APDWEAGHGT QTGLEEPMWQ LGMEESSYPE RPGEPDCIYY LRTGFCGYAD  60
RCRFNHPRDR STSPVVRSGR VSGGGDFPER AGQPICQYFM RTGSCKFGTS CKYHHPRQGA  120
SSANPFALNI YGYPLRPGEK ECSYYIKTGQ CKFGMTCKFH HPPPCNVPVP TATPATVPPA  180
PLSAATIYST PSPAPQQYGM VTGNWPLVRP SMLPGSYIQG PYGPMLISPG VLPFPGWPPY  240
PGTAPMTAPN TQSVGPGQFY GLMPMSPSGP AYTGPYQAIS PSAGGTSSIS KEHSYPQRPG  300
QPECQHYLKT GDCKFGSSCK YNHPSEWVVP ETSSALSPMG LPLRPGTPTC SYYAQHGVCK  360
FGPTCKFDHP MGTLSYSPST SSLSDMPVAP YPVGSSIGTL APSSSSSSDL RAEVSANKDS  420
GSTLSSSVSI SSSTGSSLLS KSGSISHSGL QQSSQSSATS TSSKGGVGHP C
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021835077.10.0zinc finger CCCH domain-containing protein 34-like isoform X1
SwissprotQ84W911e-146C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A0K9QIY90.0A0A0K9QIY9_SPIOL; Uncharacterized protein
STRINGXP_010666382.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-129C3H family protein