PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_173840_apcs.t2
Common NameSOVF_173840
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family C3H
Protein Properties Length: 444aa    MW: 46935.7 Da    PI: 8.5398
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_173840_apcs.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.47.6e-111541127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                       ++++ C +++rtG+C y drC+F+H++
  Sp_173840_apcs.t2 15 PGEPDCIYYLRTGFCGYADRCRFNHPR 41
                       5789*********************96 PP
2zf-CCCH37.24.8e-126690327
                       S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                       +++C++f+rtG Ck+G +Ck++H++
  Sp_173840_apcs.t2 66 QPICQYFMRTGSCKFGTSCKYHHPR 90
                       799********************96 PP
3zf-CCCH30.84.9e-10111136227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                        ++++C+++ +tG+Ck+G +CkF+H+p
  Sp_173840_apcs.t2 111 GEKECSYYIKTGQCKFGMTCKFHHPP 136
                        7899********************97 PP
4zf-CCCH36.58.2e-12272297126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        +++++C+++++tG Ck+G++Ck++H+
  Sp_173840_apcs.t2 272 PGQPECQHYLKTGDCKFGSSCKYNHP 297
                        5789*********************8 PP
5zf-CCCH35.91.2e-11318344127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        ++t+ C+++a+ G Ck+G++CkF H++
  Sp_173840_apcs.t2 318 PGTPTCSYYAQHGVCKFGPTCKFDHPM 344
                        68***********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.7791442IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-51441IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-71641IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-61942IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-52041IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.926391IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-66390IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-96690IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-66691IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-56890IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.587109137IPR000571Zinc finger, CCCH-type
SMARTSM003569.6E-4109136IPR000571Zinc finger, CCCH-type
PfamPF006428.1E-7111136IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-5111136IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.929271299IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-5271298IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-9273297IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5275298IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-4277297IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.418317345IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-6317347IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-6317344IPR000571Zinc finger, CCCH-type
PfamPF006429.2E-9318344IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-4322342IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MWQLGMEESS YPERPGEPDC IYYLRTGFCG YADRCRFNHP RDRSTSPVVR SGRVSGGGDF  60
PERAGQPICQ YFMRTGSCKF GTSCKYHHPR QGASSANPFA LNIYGYPLRP GEKECSYYIK  120
TGQCKFGMTC KFHHPPPCNV PVPTATPATV PPAPLSAATI YSTPSPAPQQ YGMVTGNWPL  180
VRPSMLPGSY IQGPYGPMLI SPGVLPFPGW PPYPGTAPMT APNTQSVGPG QFYGLMPMSP  240
SGPAYTGPYQ AISPSAGGTS SISKEHSYPQ RPGQPECQHY LKTGDCKFGS SCKYNHPSEW  300
VVPETSSALS PMGLPLRPGT PTCSYYAQHG VCKFGPTCKF DHPMGTLSYS PSTSSLSDMP  360
VAPYPVGSSI GTLAPSSSSS SDLRAEVSAN KDSGSTLSSS VSISSSTGSS LLSKSGSISH  420
SGLQQSSQSS ATSTSSKGGV GHPC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021835077.10.0zinc finger CCCH domain-containing protein 34-like isoform X1
SwissprotQ84W911e-141C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A0K9QIY90.0A0A0K9QIY9_SPIOL; Uncharacterized protein
STRINGXP_010666382.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-124C3H family protein