PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_174310_gfad.t1
Common NameSOVF_174310
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family GRAS
Protein Properties Length: 458aa    MW: 51648.8 Da    PI: 6.3053
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_174310_gfad.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS263.95.3e-81374532372
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.......fse 86 
                        ++lL++cA+a++++d++ aq++L+ l+++a pdgd++qRl++ f++AL  r ar  +  +k l  s+t+ + s + l+++k+       f++
  Sp_174310_gfad.t1  37 EQLLVHCAQAIENNDATPAQQILWVLNNIAPPDGDTNQRLTSAFLRALILRAAR--TPACKFLLNSTTTATLSNHGLNIHKFslldlanFVH 126
                        79****************************************************..444555544444434433333333333356689*** PP

               GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesg............skeeleetg 162
                        ++P+++f++ +aN+ Ilea+eg +rvHi+D+++++++Q p+L++++a+R     ++pp++ +T+ +  +++            +  ++  ++
  Sp_174310_gfad.t1 127 LTPWHQFGFTAANSVILEAIEGRSRVHIVDLSVTHCMQIPTLIDSIATRYqgrrQPPPTVTLTVGAFTQQVgqvttqvlppmfDIVSYDDLA 218
                        ************************************************9966667799****98877776678999999999999999**** PP

               GRAS 163 erLakfAeelgvpfefnvl.......vakrledleleeLrvkp...........gEalaVnlvlqlhrll...........desvsles..e 223
                         +L +fA++ gv +ef+++        a+ l++++ ++ +++            +E+l+Vn++++lh+l             e     +   
  Sp_174310_gfad.t1 219 VKLMNFARSKGVALEFKAVpttpsdgFASVLDEVRRRQHQTRFvfsnhhqeeleEEVLIVNCQMALHYLNhtaaevaaavvVE-----ElsM 305
                        *******************999888866667777665553333444466678889**************96666665532222.....1446 PP

               GRAS 224 rdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekW 315
                        r+ +Lk++++l+P++vvvve+++d +s++++ r+ +al+y++  fd++++ l res++r ++E+  + ++i+nv+++eg++r+er+e   +W
  Sp_174310_gfad.t1 306 RSMFLKALRNLNPTMVVVVEEDVDFTSKNLVGRVKSALNYFWIPFDTVDTFLTRESKQREWYEAD-IYWKIENVISHEGDQRVERQEPRTRW 396
                        77***************************************************************.************************** PP

               GRAS 316 rerleeaGFkpvpls.ekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSa 372
                         +r+ ea F+ v ++  +a++++k++l++++  g+ +++e++ lvl+Wk++++v+++a
  Sp_174310_gfad.t1 397 ARRMVEAEFQVVGFTaGEAVAEVKAMLEEHA-TGWGLKKEEEDLVLTWKGHNVVFATA 453
                        *************9725899***********.999*******************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.52810436IPR005202Transcription factor GRAS
PfamPF035141.8E-7837453IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MNRIKPWPGF PTPTSSTLSS SSSLNINHNF TDANCMEQLL VHCAQAIENN DATPAQQILW  60
VLNNIAPPDG DTNQRLTSAF LRALILRAAR TPACKFLLNS TTTATLSNHG LNIHKFSLLD  120
LANFVHLTPW HQFGFTAANS VILEAIEGRS RVHIVDLSVT HCMQIPTLID SIATRYQGRR  180
QPPPTVTLTV GAFTQQVGQV TTQVLPPMFD IVSYDDLAVK LMNFARSKGV ALEFKAVPTT  240
PSDGFASVLD EVRRRQHQTR FVFSNHHQEE LEEEVLIVNC QMALHYLNHT AAEVAAAVVV  300
EELSMRSMFL KALRNLNPTM VVVVEEDVDF TSKNLVGRVK SALNYFWIPF DTVDTFLTRE  360
SKQREWYEAD IYWKIENVIS HEGDQRVERQ EPRTRWARRM VEAEFQVVGF TAGEAVAEVK  420
AMLEEHATGW GLKKEEEDLV LTWKGHNVVF ATAFTPSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B8e-423245729421Protein SHORT-ROOT
5b3h_E8e-423245729421Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021850814.10.0scarecrow-like protein 32
SwissprotQ9SN221e-149SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A0K9QIV00.0A0A0K9QIV0_SPIOL; Uncharacterized protein
STRINGXP_010679612.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-140GRAS family protein