PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_174400_uesu.t1

Common Name

SOVF_174400

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

CAMTA

Protein Properties

Length: 932aa MW: 106018 Da PI: 7.9062

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_174400_uesu.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	164.7	1.6e-51	29	146	2	118
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 +ke k+rwl+++ei+aiL n+++++++ ++ + p+ g+++L++rkk+r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+e+np Sp_174400_uesu.t1 29 MKEaKSRWLRPNEIHAILFNYTNFTIHVKPVSLPRGGTIVLFDRKKLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGTEERIHVYYAHGEDNP 120 45559************************************************************************************* PP CG-1 93 tfqrrcywlLeeelekivlvhylevk 118 +f rrcywlL+++le+ivlvhy+e++ Sp_174400_uesu.t1 121 KFVRRCYWLLDKALEHIVLVHYRETQ 146 *********************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	75.689	25	151	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	1.3E-71	28	146	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	2.4E-45	31	144	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	5.74E-12	384	470	IPR014756	Immunoglobulin E-set
Gene3D	G3DSA:1.25.40.20	4.2E-15	567	680	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.84E-15	567	677	No hit	No description
SuperFamily	SSF48403	7.31E-16	568	680	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	13.39	576	650	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	2.9E-5	618	647	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	9.858	618	650	IPR002110	Ankyrin repeat
Pfam	PF13637	8.7E-5	620	675	No hit	No description
SuperFamily	SSF52540	4.51E-7	731	832	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PROSITE profile	PS50096	7.272	766	792	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	20	781	803	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.492	782	811	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	2.0E-4	804	826	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.56	805	829	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	2.1E-4	806	826	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	13	884	906	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.297	886	914	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 932 aa Download sequence Send to blast
MESGFNGGLG GYDIHGFRTM EDLDVPNIMK EAKSRWLRPN EIHAILFNYT NFTIHVKPVS 60 LPRGGTIVLF DRKKLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGTEERIH VYYAHGEDNP 120 KFVRRCYWLL DKALEHIVLV HYRETQESQV SPSTPTNSSF RSDLTDYSAS QLLSRGNDCV 180 VNQVYYPSMK ERTEFGDGVS MNNLDMRLHE INTLDWDELL VSNNPTEATL TTRAEQNPYL 240 QQDKQPSTFS SENNGSSLLT GHPHPGMLTS RNSMNPVADT SLAQVTHVGD MFLPLTVVQT 300 HQKEEGRIYG MGAVGAGDLS DKMAKDGLQS QDSFGKWMNE IIVDSPESVG DPSFESSLET 360 SHGSLMSSGA VNHEGPYPAQ IFCITDISPT WAYSTEETKI LVVGFYHQEY RQLAKATVYC 420 VCGDTCVPAE IIQVGVFRCM VSPQSPGSVN FYLSIDCSTP ISQVLTFEFR SPAMTNPVVR 480 QDKSQWDMFR IQMRLAYLLF TTSKSLDILS SKVSQSALKE GKKFALKYSN TADSWAYFTK 540 LTESGKITFE RAKDNLFELS MKSRLKEWLL ERVVGGSKIS ERDAEGQGVL HLCAILDYTW 600 AVYPFSCCGL SLDFRDKFGW TALHWAAYYG REKMVAALLS ARAKPNLVTD PTSENPGGCT 660 SADLAAKQGF EGLAAYLSEK ALVQQFEDMR IAGNAGGSLE TQTYETSNAN NITEEELDLK 720 DTLTAYRTAA DAAARIQVAF REQTLKQRSK IVEFLNPETE AQYIVAAMKI QHAFRNYELR 780 KQMAAALRIQ HRFRTWKLRK DFLNMRRKVI KIQAAFRGFL LRQQYQKFVW SVGVLEKAIL 840 RWRLRRKGFR GLKVEIQEPV DDQRQESDTE EDFYRASRKQ AEERVEKAVV RVQSMFRSKQ 900 AQQEYRRMKL AHTQAQLEFE DSVNPNGFMN EM

Sequence ? help Back to Top

Protein Sequence Length: 932 aa Download sequence Send to blast

MESGFNGGLG GYDIHGFRTM EDLDVPNIMK EAKSRWLRPN EIHAILFNYT NFTIHVKPVS  60
LPRGGTIVLF DRKKLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGTEERIH VYYAHGEDNP  120
KFVRRCYWLL DKALEHIVLV HYRETQESQV SPSTPTNSSF RSDLTDYSAS QLLSRGNDCV  180
VNQVYYPSMK ERTEFGDGVS MNNLDMRLHE INTLDWDELL VSNNPTEATL TTRAEQNPYL  240
QQDKQPSTFS SENNGSSLLT GHPHPGMLTS RNSMNPVADT SLAQVTHVGD MFLPLTVVQT  300
HQKEEGRIYG MGAVGAGDLS DKMAKDGLQS QDSFGKWMNE IIVDSPESVG DPSFESSLET  360
SHGSLMSSGA VNHEGPYPAQ IFCITDISPT WAYSTEETKI LVVGFYHQEY RQLAKATVYC  420
VCGDTCVPAE IIQVGVFRCM VSPQSPGSVN FYLSIDCSTP ISQVLTFEFR SPAMTNPVVR  480
QDKSQWDMFR IQMRLAYLLF TTSKSLDILS SKVSQSALKE GKKFALKYSN TADSWAYFTK  540
LTESGKITFE RAKDNLFELS MKSRLKEWLL ERVVGGSKIS ERDAEGQGVL HLCAILDYTW  600
AVYPFSCCGL SLDFRDKFGW TALHWAAYYG REKMVAALLS ARAKPNLVTD PTSENPGGCT  660
SADLAAKQGF EGLAAYLSEK ALVQQFEDMR IAGNAGGSLE TQTYETSNAN NITEEELDLK  720
DTLTAYRTAA DAAARIQVAF REQTLKQRSK IVEFLNPETE AQYIVAAMKI QHAFRNYELR  780
KQMAAALRIQ HRFRTWKLRK DFLNMRRKVI KIQAAFRGFL LRQQYQKFVW SVGVLEKAIL  840
RWRLRRKGFR GLKVEIQEPV DDQRQESDTE EDFYRASRKQ AEERVEKAVV RVQSMFRSKQ  900
AQQEYRRMKL AHTQAQLEFE DSVNPNGFMN EM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	71	88	RKKLRNFRKDGHNWKKKK
2	72	87	KKLRNFRKDGHNWKKK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00435	DAP	Transfer from AT4G16150	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021835009.1	0.0	calmodulin-binding transcription activator 5 isoform X1
Refseq	XP_021835010.1	0.0	calmodulin-binding transcription activator 5 isoform X1
Refseq	XP_021835011.1	0.0	calmodulin-binding transcription activator 5 isoform X1
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A0K9QIT6	0.0	A0A0K9QIT6_SPIOL; Uncharacterized protein
STRING	XP_010671665.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]