PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_174400_uesu.t2

Common Name

SOVF_174400

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

CAMTA

Protein Properties

Length: 931aa MW: 105947 Da PI: 7.9062

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_174400_uesu.t2	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	164.7	1.6e-51	29	146	2	118
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 +ke k+rwl+++ei+aiL n+++++++ ++ + p+ g+++L++rkk+r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+e+np Sp_174400_uesu.t2 29 MKEaKSRWLRPNEIHAILFNYTNFTIHVKPVSLPRGGTIVLFDRKKLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGTEERIHVYYAHGEDNP 120 45559************************************************************************************* PP CG-1 93 tfqrrcywlLeeelekivlvhylevk 118 +f rrcywlL+++le+ivlvhy+e++ Sp_174400_uesu.t2 121 KFVRRCYWLLDKALEHIVLVHYRETQ 146 *********************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	75.689	25	151	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	1.3E-71	28	146	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	2.4E-45	31	144	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	5.74E-12	383	469	IPR014756	Immunoglobulin E-set
CDD	cd00204	1.84E-15	566	676	No hit	No description
Gene3D	G3DSA:1.25.40.20	4.2E-15	566	679	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	7.31E-16	567	679	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	13.39	575	649	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	2.9E-5	617	646	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	9.858	617	649	IPR002110	Ankyrin repeat
Pfam	PF13637	8.7E-5	619	674	No hit	No description
SuperFamily	SSF52540	4.51E-7	730	831	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PROSITE profile	PS50096	7.272	765	791	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	20	780	802	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.492	781	810	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	2.0E-4	803	825	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.56	804	828	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	2.1E-4	805	825	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	13	883	905	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.297	885	913	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 931 aa Download sequence Send to blast
MESGFNGGLG GYDIHGFRTM EDLDVPNIMK EAKSRWLRPN EIHAILFNYT NFTIHVKPVS 60 LPRGGTIVLF DRKKLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGTEERIH VYYAHGEDNP 120 KFVRRCYWLL DKALEHIVLV HYRETQESQV SPSTPTNSSF RSDLTDYSAS QLLSRGNDCV 180 VNQVYYPSMK ERTEFGDGVS MNNLDMRLHE INTLDWDELL VSNNPTEATL TTREQNPYLQ 240 QDKQPSTFSS ENNGSSLLTG HPHPGMLTSR NSMNPVADTS LAQVTHVGDM FLPLTVVQTH 300 QKEEGRIYGM GAVGAGDLSD KMAKDGLQSQ DSFGKWMNEI IVDSPESVGD PSFESSLETS 360 HGSLMSSGAV NHEGPYPAQI FCITDISPTW AYSTEETKIL VVGFYHQEYR QLAKATVYCV 420 CGDTCVPAEI IQVGVFRCMV SPQSPGSVNF YLSIDCSTPI SQVLTFEFRS PAMTNPVVRQ 480 DKSQWDMFRI QMRLAYLLFT TSKSLDILSS KVSQSALKEG KKFALKYSNT ADSWAYFTKL 540 TESGKITFER AKDNLFELSM KSRLKEWLLE RVVGGSKISE RDAEGQGVLH LCAILDYTWA 600 VYPFSCCGLS LDFRDKFGWT ALHWAAYYGR EKMVAALLSA RAKPNLVTDP TSENPGGCTS 660 ADLAAKQGFE GLAAYLSEKA LVQQFEDMRI AGNAGGSLET QTYETSNANN ITEEELDLKD 720 TLTAYRTAAD AAARIQVAFR EQTLKQRSKI VEFLNPETEA QYIVAAMKIQ HAFRNYELRK 780 QMAAALRIQH RFRTWKLRKD FLNMRRKVIK IQAAFRGFLL RQQYQKFVWS VGVLEKAILR 840 WRLRRKGFRG LKVEIQEPVD DQRQESDTEE DFYRASRKQA EERVEKAVVR VQSMFRSKQA 900 QQEYRRMKLA HTQAQLEFED SVNPNGFMNE M

Sequence ? help Back to Top

Protein Sequence Length: 931 aa Download sequence Send to blast

MESGFNGGLG GYDIHGFRTM EDLDVPNIMK EAKSRWLRPN EIHAILFNYT NFTIHVKPVS  60
LPRGGTIVLF DRKKLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGTEERIH VYYAHGEDNP  120
KFVRRCYWLL DKALEHIVLV HYRETQESQV SPSTPTNSSF RSDLTDYSAS QLLSRGNDCV  180
VNQVYYPSMK ERTEFGDGVS MNNLDMRLHE INTLDWDELL VSNNPTEATL TTREQNPYLQ  240
QDKQPSTFSS ENNGSSLLTG HPHPGMLTSR NSMNPVADTS LAQVTHVGDM FLPLTVVQTH  300
QKEEGRIYGM GAVGAGDLSD KMAKDGLQSQ DSFGKWMNEI IVDSPESVGD PSFESSLETS  360
HGSLMSSGAV NHEGPYPAQI FCITDISPTW AYSTEETKIL VVGFYHQEYR QLAKATVYCV  420
CGDTCVPAEI IQVGVFRCMV SPQSPGSVNF YLSIDCSTPI SQVLTFEFRS PAMTNPVVRQ  480
DKSQWDMFRI QMRLAYLLFT TSKSLDILSS KVSQSALKEG KKFALKYSNT ADSWAYFTKL  540
TESGKITFER AKDNLFELSM KSRLKEWLLE RVVGGSKISE RDAEGQGVLH LCAILDYTWA  600
VYPFSCCGLS LDFRDKFGWT ALHWAAYYGR EKMVAALLSA RAKPNLVTDP TSENPGGCTS  660
ADLAAKQGFE GLAAYLSEKA LVQQFEDMRI AGNAGGSLET QTYETSNANN ITEEELDLKD  720
TLTAYRTAAD AAARIQVAFR EQTLKQRSKI VEFLNPETEA QYIVAAMKIQ HAFRNYELRK  780
QMAAALRIQH RFRTWKLRKD FLNMRRKVIK IQAAFRGFLL RQQYQKFVWS VGVLEKAILR  840
WRLRRKGFRG LKVEIQEPVD DQRQESDTEE DFYRASRKQA EERVEKAVVR VQSMFRSKQA  900
QQEYRRMKLA HTQAQLEFED SVNPNGFMNE M

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	71	88	RKKLRNFRKDGHNWKKKK
2	72	87	KKLRNFRKDGHNWKKK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00435	DAP	Transfer from AT4G16150	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021835012.1	0.0	calmodulin-binding transcription activator 5 isoform X2
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A0K9QKS6	0.0	A0A0K9QKS6_SPIOL; Uncharacterized protein
STRING	XP_010671665.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]