PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_175580_fdau.t1

Common Name

SOVF_175580

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

CAMTA

Protein Properties

Length: 968aa MW: 107357 Da PI: 5.5397

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_175580_fdau.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	173.6	2.7e-54	13	126	3	116
CG-1 3 kekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptf 94 ++rwlk+ e++ iL+n+e++++t+e++++p+sgsl+L+n++++r+frkDG+sw+kkkdg+tv E+he+LKvg+ e+l+cyYah+ee+p+f Sp_175580_fdau.t1 13 AAQTRWLKPAEVLFILQNHENYKITQEAPQKPPSGSLFLFNKRVLRFFRKDGHSWRKKKDGRTVGEAHERLKVGNSEALNCYYAHGEETPNF 104 4499************************************************************************************** PP CG-1 95 qrrcywlLeeelekivlvhyle 116 qrr+yw+L++ +e+ivlvhy++ Sp_175580_fdau.t1 105 QRRSYWMLDRVHEHIVLVHYRD 126 ******************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	76.298	7	133	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	6.2E-71	10	128	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	5.4E-48	14	126	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	3.6E-8	400	487	IPR013783	Immunoglobulin-like fold
CDD	cd00102	6.03E-6	402	487	No hit	No description
Pfam	PF01833	6.9E-10	403	485	IPR002909	IPT domain
SuperFamily	SSF81296	5.6E-18	403	486	IPR014756	Immunoglobulin E-set
Gene3D	G3DSA:1.25.40.20	6.9E-13	595	690	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	14.079	597	689	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	8.86E-14	601	691	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.51E-11	602	689	No hit	No description
Pfam	PF12796	8.9E-7	609	690	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	4.9E-4	630	659	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	10.74	630	662	IPR002110	Ankyrin repeat
SMART	SM00248	2100	669	698	IPR002110	Ankyrin repeat
SMART	SM00015	30	747	769	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.492	748	776	IPR000048	IQ motif, EF-hand binding site
SuperFamily	SSF52540	1.17E-6	751	773	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	0.0025	807	829	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.279	808	837	IPR000048	IQ motif, EF-hand binding site
SuperFamily	SSF52540	1.17E-6	808	859	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Pfam	PF00612	0.0015	810	828	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	4.9E-4	830	852	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.267	831	855	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	1.5E-4	833	852	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 968 aa Download sequence Send to blast
MQSGFDTNEL LRAAQTRWLK PAEVLFILQN HENYKITQEA PQKPPSGSLF LFNKRVLRFF 60 RKDGHSWRKK KDGRTVGEAH ERLKVGNSEA LNCYYAHGEE TPNFQRRSYW MLDRVHEHIV 120 LVHYRDITEG KLSSGSITDL SPGTSSIISQ SPSTYTMQNP GSSCLSDFRE SYQSYPSPGS 180 IEVSSDAIMG KGIDCLNESN TTENLSMRSE FDVNQALRRL EVQLSLDDDC LKEYAPLDDQ 240 NRNEDVYGEL DDQYGSRYAG AWANSNGPSQ QNQGGSEVHH HVTSGMGSVQ NGEPLFWNDF 300 LDLSKGFPNQ KAEGDKEYIA VANGKEVSSS GRPAEPENHP EDYGGHIAGK WTEAAKDTDT 360 LVYSSQLYPA TPELSTMLLD PSLGKSLGTD LSLTVAKEQR FSIHEISPEW GFTNDSTKVI 420 IIGSFLCDPS MSKWMCMFDD VEVPLQVVQN GVLCCQAPPH SSGKVTLCIT SGNRESCSEI 480 REFEYRDKHN TCVNCDKHEG EVTRSTDEML LLVRLVQLLF SNSHLQQGEN NELGVDKQKT 540 DGDMWDQVIE GLLVGGATSS DTLDWLLQQL LKDKLQQWLS SKSVEGEACG DCFLSRKEQG 600 IIHMIAGLGY EWALNPVLGC GVGINFRDIN GWTALHWAAR FGREKMVAAL IASGASAVAL 660 TDPSSHDPSG RIAAYIAAAS GHKGLAGYLS ELALTSHLSS LTLAESELSK GSADVEAELT 720 VCLSKENINT TDQDQLSLKH TLAAVRNAAQ AAARIQSAFR AHSFRKRQYR EATSSEVAAD 780 LDDYGFTIND IQGLSAASKL AFPGSHDHQK AALSIQKNYR GWKDRKDFLT LRQKVVKIQA 840 HVRGHQVRKK YRVICWAVGI LEKVVLRWRR KGAGLRGFRP ESDTVDEDED DDDIIKVFRK 900 EKVNVAIDDA VTRVLSMVES PEARQQYHRM LGRIEEAKAE LRGLTSSGAS DSPDGVSSMD 960 NDDFLNIS

Sequence ? help Back to Top

Protein Sequence Length: 968 aa Download sequence Send to blast

MQSGFDTNEL LRAAQTRWLK PAEVLFILQN HENYKITQEA PQKPPSGSLF LFNKRVLRFF  60
RKDGHSWRKK KDGRTVGEAH ERLKVGNSEA LNCYYAHGEE TPNFQRRSYW MLDRVHEHIV  120
LVHYRDITEG KLSSGSITDL SPGTSSIISQ SPSTYTMQNP GSSCLSDFRE SYQSYPSPGS  180
IEVSSDAIMG KGIDCLNESN TTENLSMRSE FDVNQALRRL EVQLSLDDDC LKEYAPLDDQ  240
NRNEDVYGEL DDQYGSRYAG AWANSNGPSQ QNQGGSEVHH HVTSGMGSVQ NGEPLFWNDF  300
LDLSKGFPNQ KAEGDKEYIA VANGKEVSSS GRPAEPENHP EDYGGHIAGK WTEAAKDTDT  360
LVYSSQLYPA TPELSTMLLD PSLGKSLGTD LSLTVAKEQR FSIHEISPEW GFTNDSTKVI  420
IIGSFLCDPS MSKWMCMFDD VEVPLQVVQN GVLCCQAPPH SSGKVTLCIT SGNRESCSEI  480
REFEYRDKHN TCVNCDKHEG EVTRSTDEML LLVRLVQLLF SNSHLQQGEN NELGVDKQKT  540
DGDMWDQVIE GLLVGGATSS DTLDWLLQQL LKDKLQQWLS SKSVEGEACG DCFLSRKEQG  600
IIHMIAGLGY EWALNPVLGC GVGINFRDIN GWTALHWAAR FGREKMVAAL IASGASAVAL  660
TDPSSHDPSG RIAAYIAAAS GHKGLAGYLS ELALTSHLSS LTLAESELSK GSADVEAELT  720
VCLSKENINT TDQDQLSLKH TLAAVRNAAQ AAARIQSAFR AHSFRKRQYR EATSSEVAAD  780
LDDYGFTIND IQGLSAASKL AFPGSHDHQK AALSIQKNYR GWKDRKDFLT LRQKVVKIQA  840
HVRGHQVRKK YRVICWAVGI LEKVVLRWRR KGAGLRGFRP ESDTVDEDED DDDIIKVFRK  900
EKVNVAIDDA VTRVLSMVES PEARQQYHRM LGRIEEAKAE LRGLTSSGAS DSPDGVSSMD  960
NDDFLNIS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:25039701, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:28351986}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021845906.1	0.0	calmodulin-binding transcription activator 4
Swissprot	Q9FYG2	0.0	CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBL	A0A0K9QIH3	0.0	A0A0K9QIH3_SPIOL; Uncharacterized protein
STRING	XP_010682739.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	0.0	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]