PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_175580_fdau.t2

Common Name

SOVF_175580

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

CAMTA

Protein Properties

Length: 985aa MW: 109186 Da PI: 5.7506

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_175580_fdau.t2	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	173.6	2.8e-54	13	126	3	116
CG-1 3 kekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptf 94 ++rwlk+ e++ iL+n+e++++t+e++++p+sgsl+L+n++++r+frkDG+sw+kkkdg+tv E+he+LKvg+ e+l+cyYah+ee+p+f Sp_175580_fdau.t2 13 AAQTRWLKPAEVLFILQNHENYKITQEAPQKPPSGSLFLFNKRVLRFFRKDGHSWRKKKDGRTVGEAHERLKVGNSEALNCYYAHGEETPNF 104 4499************************************************************************************** PP CG-1 95 qrrcywlLeeelekivlvhyle 116 qrr+yw+L++ +e+ivlvhy++ Sp_175580_fdau.t2 105 QRRSYWMLDRVHEHIVLVHYRD 126 ******************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	76.298	7	133	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	6.2E-71	10	128	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	5.5E-48	14	126	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	3.7E-8	417	504	IPR013783	Immunoglobulin-like fold
CDD	cd00102	6.15E-6	419	504	No hit	No description
SuperFamily	SSF81296	5.74E-18	420	503	IPR014756	Immunoglobulin E-set
Pfam	PF01833	7.1E-10	420	502	IPR002909	IPT domain
Gene3D	G3DSA:1.25.40.20	7.1E-13	612	707	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	14.079	614	706	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	9.02E-14	618	708	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.55E-11	619	706	No hit	No description
Pfam	PF12796	9.1E-7	626	707	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	10.74	647	679	IPR002110	Ankyrin repeat
SMART	SM00248	4.9E-4	647	676	IPR002110	Ankyrin repeat
SMART	SM00248	2100	686	715	IPR002110	Ankyrin repeat
SMART	SM00015	30	764	786	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.492	765	793	IPR000048	IQ motif, EF-hand binding site
SuperFamily	SSF52540	1.19E-6	768	790	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	0.0025	824	846	IPR000048	IQ motif, EF-hand binding site
SuperFamily	SSF52540	1.19E-6	825	876	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PROSITE profile	PS50096	8.279	825	854	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.0015	827	845	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	4.9E-4	847	869	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.267	848	872	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	1.5E-4	850	869	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 985 aa Download sequence Send to blast
MQSGFDTNEL LRAAQTRWLK PAEVLFILQN HENYKITQEA PQKPPSGSLF LFNKRVLRFF 60 RKDGHSWRKK KDGRTVGEAH ERLKVGNSEA LNCYYAHGEE TPNFQRRSYW MLDRVHEHIV 120 LVHYRDITEG KLSSGSITDL SPGTSSIISQ SPSTYTMQNP GSSCLSDFRE SYQSYPSPGS 180 IEVSSDAIMG KGIDCLNESN TTENLSMRSE FDVNQALRRL EVQLSLDDDC LKEYAPLDDQ 240 NRNEDVYGEL DDQYGSRYAG AWANSNGPSQ QNQGVKSLLL RANVSSRIFG SGSEVHHHVT 300 SGMGSVQNGE PLFWNDFLDL SKGFPNQKAE GDKEYIAVAN GKEVSSSGRP AEPENHPEDY 360 GGHIAGKWTE AAKDTDTLVY SSQLYPATPE LSTMLLDPSL GKSLGTDLSL TVAKEQRFSI 420 HEISPEWGFT NDSTKVIIIG SFLCDPSMSK WMCMFDDVEV PLQVVQNGVL CCQAPPHSSG 480 KVTLCITSGN RESCSEIREF EYRDKHNTCV NCDKHEGEVT RSTDEMLLLV RLVQLLFSNS 540 HLQQGENNEL GVDKQKTDGD MWDQVIEGLL VGGATSSDTL DWLLQQLLKD KLQQWLSSKS 600 VEGEACGDCF LSRKEQGIIH MIAGLGYEWA LNPVLGCGVG INFRDINGWT ALHWAARFGR 660 EKMVAALIAS GASAVALTDP SSHDPSGRIA AYIAAASGHK GLAGYLSELA LTSHLSSLTL 720 AESELSKGSA DVEAELTVCL SKENINTTDQ DQLSLKHTLA AVRNAAQAAA RIQSAFRAHS 780 FRKRQYREAT SSEVAADLDD YGFTINDIQG LSAASKLAFP GSHDHQKAAL SIQKNYRGWK 840 DRKDFLTLRQ KVVKIQAHVR GHQVRKKYRV ICWAVGILEK VVLRWRRKGA GLRGFRPESD 900 TVDEDEDDDD IIKVFRKEKV NVAIDDAVTR VLSMVESPEA RQQYHRMLGR IEEAKAELRG 960 LTSSGASDSP DGVSSMDNDD FLNIS

Sequence ? help Back to Top

Protein Sequence Length: 985 aa Download sequence Send to blast

MQSGFDTNEL LRAAQTRWLK PAEVLFILQN HENYKITQEA PQKPPSGSLF LFNKRVLRFF  60
RKDGHSWRKK KDGRTVGEAH ERLKVGNSEA LNCYYAHGEE TPNFQRRSYW MLDRVHEHIV  120
LVHYRDITEG KLSSGSITDL SPGTSSIISQ SPSTYTMQNP GSSCLSDFRE SYQSYPSPGS  180
IEVSSDAIMG KGIDCLNESN TTENLSMRSE FDVNQALRRL EVQLSLDDDC LKEYAPLDDQ  240
NRNEDVYGEL DDQYGSRYAG AWANSNGPSQ QNQGVKSLLL RANVSSRIFG SGSEVHHHVT  300
SGMGSVQNGE PLFWNDFLDL SKGFPNQKAE GDKEYIAVAN GKEVSSSGRP AEPENHPEDY  360
GGHIAGKWTE AAKDTDTLVY SSQLYPATPE LSTMLLDPSL GKSLGTDLSL TVAKEQRFSI  420
HEISPEWGFT NDSTKVIIIG SFLCDPSMSK WMCMFDDVEV PLQVVQNGVL CCQAPPHSSG  480
KVTLCITSGN RESCSEIREF EYRDKHNTCV NCDKHEGEVT RSTDEMLLLV RLVQLLFSNS  540
HLQQGENNEL GVDKQKTDGD MWDQVIEGLL VGGATSSDTL DWLLQQLLKD KLQQWLSSKS  600
VEGEACGDCF LSRKEQGIIH MIAGLGYEWA LNPVLGCGVG INFRDINGWT ALHWAARFGR  660
EKMVAALIAS GASAVALTDP SSHDPSGRIA AYIAAASGHK GLAGYLSELA LTSHLSSLTL  720
AESELSKGSA DVEAELTVCL SKENINTTDQ DQLSLKHTLA AVRNAAQAAA RIQSAFRAHS  780
FRKRQYREAT SSEVAADLDD YGFTINDIQG LSAASKLAFP GSHDHQKAAL SIQKNYRGWK  840
DRKDFLTLRQ KVVKIQAHVR GHQVRKKYRV ICWAVGILEK VVLRWRRKGA GLRGFRPESD  900
TVDEDEDDDD IIKVFRKEKV NVAIDDAVTR VLSMVESPEA RQQYHRMLGR IEEAKAELRG  960
LTSSGASDSP DGVSSMDNDD FLNIS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:25039701, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:28351986}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021845906.1	0.0	calmodulin-binding transcription activator 4
Swissprot	Q9FYG2	0.0	CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBL	A0A0K9QKD6	0.0	A0A0K9QKD6_SPIOL; Uncharacterized protein
STRING	XP_010682739.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	0.0	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]