PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_175780_uucd.t1
Common NameSOVF_175780
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family DBB
Protein Properties Length: 216aa    MW: 23627.5 Da    PI: 5.3269
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_175780_uucd.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.86.9e-06445540
           zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH.kg.....Htvv 40
                        C+ +e   +  fC  ++  lC+ C ++ H  +     Ht+v
  Sp_175780_uucd.t1  4 LCDVCEGAAAVCFCAADEAALCRACDEKVHmCNklasrHTRV 45
                       7******99*******************99411466667765 PP
2zf-B_box26.71.1e-085392338
           zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38
                        +kC+ +e+ ++ ++Ce +++ lC +C +  H g    H+
  Sp_175780_uucd.t1 53 VPKCDICENAPAFFYCEIDGSSLCLQCDTVVHVGgkrtHR 92
                       689***************************9966666776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.855147IPR000315B-box-type zinc finger
SMARTSM003363.1E-7147IPR000315B-box-type zinc finger
CDDcd000218.47E-7345No hitNo description
SMARTSM003361.3E-135196IPR000315B-box-type zinc finger
PROSITE profilePS501199.0865196IPR000315B-box-type zinc finger
PfamPF006432.7E-75392IPR000315B-box-type zinc finger
CDDcd000215.09E-85493No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MRTLCDVCEG AAAVCFCAAD EAALCRACDE KVHMCNKLAS RHTRVGLAAP NAVPKCDICE  60
NAPAFFYCEI DGSSLCLQCD TVVHVGGKRT HRRYLLLRQR AEFPGDKYVN VEDMSSGDPM  120
DARKEPNQLS EAIAMEKEQN NVVIVDGIHG NGVPDAQMDN KMIDLNARPQ RTVLQSSNNN  180
NNNNNNNNQG MDYVSGTNGD SASVVPVISF KSEREK
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021836436.11e-160B-box zinc finger protein 19-like isoform X2
SwissprotC0SVM54e-75BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A0K9QJY41e-159A0A0K9QJY4_SPIOL; Uncharacterized protein
STRINGXP_010690759.11e-108(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.14e-63DBB family protein