PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_175850_cdyu.t1

Common Name

SOVF_175850

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

C2H2

Protein Properties

Length: 395aa MW: 43642.8 Da PI: 10.0967

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_175850_cdyu.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12	0.00065	152	173	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C++Cg++ r++ ++H+++H Sp_175850_cdyu.t1 152 TCHKCGEPLARQDAEEHHLSKH 173 7*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.90.228.10	7.8E-10	175	394	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain
SuperFamily	SSF56399	1.27E-14	175	394	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence Send to blast
MSAVWIAVKK SLHCKSTSSE VHEPRPRKKS KNNCCKPKSR GTVPPSASLS CKSTLDDVIH 60 GGRRVKQNSS NRSPMSIRSS DLINPVTHHV RFTNSELRDQ VHNNAGDSPA SRPTLKTFGL 120 GIDSPSSISN EPGSTRVSSF RCQRLSNGGG QTCHKCGEPL ARQDAEEHHL SKHAVTEVTE 180 GDSSRKVIEM IFKAGWIDTE NRGRIDKILK VHNPQTKLAQ FEEYREMVKI RAHRLQHAKK 240 HPRLLADGNE LLRFYGTTIA CSLGKKGSSS LCTLQRCNVC CILRHGFSTQ DGVNHSILGI 300 FTTSTSESAY RSIEFGTEEK ENHSMALKKA LIVCRAIAGR VHRPMVENIQ EFVGGRRSGF 360 DSLAGKLGSN SSHVEELFVL KPTALLPCFI IICKL

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence Send to blast

MSAVWIAVKK SLHCKSTSSE VHEPRPRKKS KNNCCKPKSR GTVPPSASLS CKSTLDDVIH  60
GGRRVKQNSS NRSPMSIRSS DLINPVTHHV RFTNSELRDQ VHNNAGDSPA SRPTLKTFGL  120
GIDSPSSISN EPGSTRVSSF RCQRLSNGGG QTCHKCGEPL ARQDAEEHHL SKHAVTEVTE  180
GDSSRKVIEM IFKAGWIDTE NRGRIDKILK VHNPQTKLAQ FEEYREMVKI RAHRLQHAKK  240
HPRLLADGNE LLRFYGTTIA CSLGKKGSSS LCTLQRCNVC CILRHGFSTQ DGVNHSILGI  300
FTTSTSESAY RSIEFGTEEK ENHSMALKKA LIVCRAIAGR VHRPMVENIQ EFVGGRRSGF  360
DSLAGKLGSN SSHVEELFVL KPTALLPCFI IICKL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021850092.1	0.0	uncharacterized protein LOC110789695
TrEMBL	A0A0K9QID7	0.0	A0A0K9QID7_SPIOL; Uncharacterized protein
STRING	XP_010668146.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27240.1	6e-99	C2H2 family protein