PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_177620_ptwy.t1
Common NameSOVF_177620
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family C2H2
Protein Properties Length: 290aa    MW: 31117.9 Da    PI: 4.4143
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_177620_ptwy.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.00053265287223
                        EETTTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                        +C  C+k+F++   L++H +  H
  Sp_177620_ptwy.t1 265 SCDSCKKTFNSDNALQSHNKAkH 287
                        6*****************88766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.367264290IPR007087Zinc finger, C2H2
PROSITE patternPS000280266287IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MSMQFWGLEV KAKEPSKVSL DDGRIIHLSQ ATLSDVKKET DPVTVSVTVD NKKFVLGVLT  60
KSNPQLSFDL VFETEFEISH NFKNGSVHFL GYQTEMPSSD GEMFGDSSDE EEDEEVPVLQ  120
KENGKAAPAS AAVAKPKVAA KPVKSAEEDS DEDDSDDSDD DDLSDGESIP FSDSEDDDDD  180
DDEEDEMSED EKPVPVPAKA ESGKKRANAD AKTPESKKAK LVTPQKTDGK KGAQTAHTAT  240
PHPSKKGGKT PVGDKATPKS AGSASCDSCK KTFNSDNALQ SHNKAKHAAK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021850646.11e-148histone deacetylase HDT2-like
TrEMBLA0A0K9QHT50.0A0A0K9QHT5_SPIOL; Uncharacterized protein
STRINGXP_010690019.12e-88(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.27e-25histone deacetylase 3