PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_177770_dzgp.t1
Common NameSOVF_177770
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MYB_related
Protein Properties Length: 676aa    MW: 75998.6 Da    PI: 4.4664
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_177770_dzgp.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.82.5e-08526564343
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksr 43 
                        rWT+++  ll++a  q+G +  + I + ++ gRt+ q+k++
  Sp_177770_dzgp.t1 526 RWTKQDTVLLYKALSQFGRN-YSMIQQLFP-GRTRDQIKLK 564
                        9*****************66.*********.********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159632.5E-20517601No hitNo description
SMARTSM007173.7E-6523571IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.0E-7524564IPR009057Homeodomain-like
SuperFamilySSF466893.81E-8526569IPR009057Homeodomain-like
CDDcd001671.14E-5526567No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MDFLDDPFAD PVVTKAPPTG RFQPKAKPRP KKGPLAAVRP VITKATKEPP STSVPHDSVL  60
DKSVQLNDLV EVLSDAPQNS SLTDYESSGK TSVEATDLTG SAVIEHSEIA GLSTTEAGCH  120
DETSTQDASS IQNEEELSDF LNVSFASASL LRPCNVQTSP DESIDKTFQD TDFQIDVEQL  180
EAGDFSCLDS IDITTEGASA FEKRAVKFQP KPKAQIDRRK KDLVKDSSHL PLKLPSENQY  240
TARDGSIHAE ELETDSDVLR MRPDGNFSLD SSAYQPDAVV FEDTDSLMPE NLPQQSREDH  300
GETNSNDALG SFAKSVDEGF LSGFEGNENG YELLNGINGG FNDNNSSYDR APDESAPNRD  360
ENNDGDHLAV ETSQKKRPRK SKKVAAENKK PARKRKKAAQ ELDKPIEKPP KKFPRATRRK  420
RCVDKALLEV PDDELDLQRV PIRDLIILAE YKERRDRKEA AAVMLPPTSE RIDDLPPEDP  480
PYYDHNEAYG YDQDGETFDN PSTFEVQKDT GYFNYQSFMT KEPRIRWTKQ DTVLLYKALS  540
QFGRNYSMIQ QLFPGRTRDQ IKLKCDNERR INPIRFEDAW TSRTQDLSCF KLVIKSLEEQ  600
AAEDAKMDKD DSVCITGEEE GPEEVLNTHD DVANSKQKEE GRVVNQEPDK HQVESPPKSY  660
YSEEEEIDWS SYKSEL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1374396KKRPRKSKKVAAENKKPARKRKK
2391397ARKRKKA
3392396RKRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021857744.10.0uncharacterized protein LOC110796950
TrEMBLA0A0K9QJP90.0A0A0K9QJP9_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010671339.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.12e-37MYB_related family protein