PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_177770_dzgp.t2
Common NameSOVF_177770
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MYB_related
Protein Properties Length: 686aa    MW: 77172.1 Da    PI: 4.5015
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_177770_dzgp.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.82.5e-08536574343
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksr 43 
                        rWT+++  ll++a  q+G +  + I + ++ gRt+ q+k++
  Sp_177770_dzgp.t2 536 RWTKQDTVLLYKALSQFGRN-YSMIQQLFP-GRTRDQIKLK 574
                        9*****************66.*********.********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159632.6E-20527611No hitNo description
SMARTSM007173.7E-6533581IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-7534574IPR009057Homeodomain-like
SuperFamilySSF466893.89E-8536579IPR009057Homeodomain-like
CDDcd001671.16E-5536577No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    Send to blast
MDFLDDPFAD PVVTKAPPTG RFQPKAKPRP KKGPLAAVRP VITKATKEPP STSVPHDSVL  60
DKSVQLNDLV EVLSDAPQNS SLTDYESSGK TSVEATDLTG SAVIEHSEIA GLSTTEAGCH  120
DETSTQDASS IQNEEELSDF LNVSFASASL LRPCNVQTSP DESIDKTFQD TDFQIDVEQL  180
EAGDFSCLDS IDITTEGASA FEKRAVKFQP KPKAQIDRRK KDLVKDSSHL PLKLPSENQY  240
TARDGSIHAE ELETDSDVLR MRPDGNFSLD SSAYQPDAVV FEDTDSLMPE NLPQQAVRLF  300
RGIIFSREDH GETNSNDALG SFAKSVDEGF LSGFEGNENG YELLNGINGG FNDNNSSYDR  360
APDESAPNRD ENNDGDHLAV ETSQKKRPRK SKKVAAENKK PARKRKKAAQ ELDKPIEKPP  420
KKFPRATRRK RCVDKALLEV PDDELDLQRV PIRDLIILAE YKERRDRKEA AAVMLPPTSE  480
RIDDLPPEDP PYYDHNEAYG YDQDGETFDN PSTFEVQKDT GYFNYQSFMT KEPRIRWTKQ  540
DTVLLYKALS QFGRNYSMIQ QLFPGRTRDQ IKLKCDNERR INPIRFEDAW TSRTQDLSCF  600
KLVIKSLEEQ AAEDAKMDKD DSVCITGEEE GPEEVLNTHD DVANSKQKEE GRVVNQEPDK  660
HQVESPPKSY YSEEEEIDWS SYKSEL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1384406KKRPRKSKKVAAENKKPARKRKK
2401407ARKRKKA
3402406RKRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021857744.10.0uncharacterized protein LOC110796950
TrEMBLA0A0K9QHQ40.0A0A0K9QHQ4_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010671339.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.11e-35MYB_related family protein