PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_177770_dzgp.t3
Common NameSOVF_177770
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MYB_related
Protein Properties Length: 677aa    MW: 76069.7 Da    PI: 4.4664
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_177770_dzgp.t3genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.82.5e-08527565343
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksr 43 
                        rWT+++  ll++a  q+G +  + I + ++ gRt+ q+k++
  Sp_177770_dzgp.t3 527 RWTKQDTVLLYKALSQFGRN-YSMIQQLFP-GRTRDQIKLK 565
                        9*****************66.*********.********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159632.5E-20518602No hitNo description
SMARTSM007173.7E-6524572IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.0E-7525565IPR009057Homeodomain-like
CDDcd001671.14E-5527568No hitNo description
SuperFamilySSF466893.81E-8527570IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    Send to blast
MDFLDDPFAD PVVTKAPPTG RFQPKAKPRP KKGPLAAVRP VITKATKEPP STSVPHDSVL  60
DKSVQLNDLV EVLSDAPQNS SLTDYESSGK TSVEATDLTG SAVIEHSEIA GLSTTEAGCH  120
DETSTQDASS IQNEEELSDF LNVSFASASL LRPCNVQTSP DESIDKTFQD TDFQIDVEQL  180
EAGDFSCLDS IDITTEGASA FEKRAVKFQP KPKAQIDRRK KDLVKDSSHL PLKLPSENQY  240
TARDGSIHAE ELETDSDVLR MRPDGNFSLD SSAYQPDAVV FEDTDSLMPE NLPQQASRED  300
HGETNSNDAL GSFAKSVDEG FLSGFEGNEN GYELLNGING GFNDNNSSYD RAPDESAPNR  360
DENNDGDHLA VETSQKKRPR KSKKVAAENK KPARKRKKAA QELDKPIEKP PKKFPRATRR  420
KRCVDKALLE VPDDELDLQR VPIRDLIILA EYKERRDRKE AAAVMLPPTS ERIDDLPPED  480
PPYYDHNEAY GYDQDGETFD NPSTFEVQKD TGYFNYQSFM TKEPRIRWTK QDTVLLYKAL  540
SQFGRNYSMI QQLFPGRTRD QIKLKCDNER RINPIRFEDA WTSRTQDLSC FKLVIKSLEE  600
QAAEDAKMDK DDSVCITGEE EGPEEVLNTH DDVANSKQKE EGRVVNQEPD KHQVESPPKS  660
YYSEEEEIDW SSYKSEL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1375397KKRPRKSKKVAAENKKPARKRKK
2392398ARKRKKA
3393397RKRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021857744.10.0uncharacterized protein LOC110796950
TrEMBLA0A0K9QJB90.0A0A0K9QJB9_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010671339.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.11e-36MYB_related family protein