PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_178030_tmpf.t1

Common Name

SOVF_178030

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

GRAS

Protein Properties

Length: 651aa MW: 73452.4 Da PI: 5.3602

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_178030_tmpf.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	414.6	8.7e-127	267	635	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 lv+ L++c+ea+++++ ++++++a+l e+asp+ +++ Rl+ayfteALa r++r +++++++ p+e ++ + ++ +aa++l++++sPi+ Sp_178030_tmpf.t1 267 LVSFLMSCVEAIQTRNIPAINHFIAKLGEQASPRSpSTISRLTAYFTEALALRVTRLWPRIFHISVPRELDRFDDESGAAAFRLLNQISPIP 358 5788*****************************99******************************9999999********** PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183 kf h+taN+++l+a+eg+++vHiiDfdi+qGlQW++++q+La+R+++p ++R+Tg+g+ sk+el etg+rLa+fAe++++pfef++ v+ Sp_178030_tmpf.t1 359 KFIHFTANEMLLRAFEGKDKVHIIDFDIKQGLQWASFFQSLATRANPPSHVRLTGIGE----SKQELVETGDRLANFAEAFNLPFEFHP-VV 445 ******************************************************....************************.7 PP GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275 +rled++l++L+vk+gE++aVn+++qlh++l + + + ++++ l++s++P+ +v++eqea+hn++++ r++++l+yysa+fds++++l Sp_178030_tmpf.t1 446 DRLEDVRLWMLHVKEGESVAVNCIFQLHKTLYDANNG--AFRDFMGLIRSTNPTALVMAEQEAEHNEPNLEMRVCNSLRYYSAVFDSIDSTL 535 *****************************555444..4599********************************************* PP GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpls..ekaakqaklllrkvksdgyrveeesgslv.lgWkd 364 p + +r+k+E++ +grei+n+vaceg++r+erhe++++W++++e+ GF+ + + e+++ q ++ll++++++gy+vee+ ++ + l W+d Sp_178030_tmpf.t1 536 PFDIPARVKIEEM-FGREIRNIVACEGSDRIERHEKFGNWKRKMEQEGFRGIMRRddESEVFQSRMLLKMYSNEGYNVEEQGDEGItLRWMD 626 *********.********************************997751166789*************99665555* PP GRAS 365 rpLvsvSaW 373 +pL++vS W Sp_178030_tmpf.t1 627 QPLYTVSLW 635 ******* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	54.401	241	615	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.0E-124	267	635	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 651 aa Download sequence Send to blast
MLAGCSSSLL SPRHRLRSEA SAQFQACHYP LPSMSTQRLD LPCNFPRKEV SVTRPQSIRA 60 PVVGLSLEKP TLKQTIKLPP PSPEGRREIK AEFWREKGKS LKRRSFRDDD DDGDDEDEDE 120 EGSKRKRSRF DFGESEGFWM QQPGFGIVNF PQLPFSISCS GEEERVCFGG PTDVVSPPPL 180 PPLSHNPWIT EYGGEIEGEP SHHGAVTTTT TTTSGSSSSS DSHSLNVPEY GQFGNGSMNP 240 NPNPGDGSRL VRTHNTNDQT EQQGFELVSF LMSCVEAIQT RNIPAINHFI AKLGEQASPR 300 SPSTISRLTA YFTEALALRV TRLWPRIFHI SVPRELDRFD DESGAAAFRL LNQISPIPKF 360 IHFTANEMLL RAFEGKDKVH IIDFDIKQGL QWASFFQSLA TRANPPSHVR LTGIGESKQE 420 LVETGDRLAN FAEAFNLPFE FHPVVDRLED VRLWMLHVKE GESVAVNCIF QLHKTLYDAN 480 NGAFRDFMGL IRSTNPTALV MAEQEAEHNE PNLEMRVCNS LRYYSAVFDS IDSTLPFDIP 540 ARVKIEEMFG REIRNIVACE GSDRIERHEK FGNWKRKMEQ EGFRGIMRRD DESEVFQSRM 600 LLKMYSNEGY NVEEQGDEGI TLRWMDQPLY TVSLWGSVDA AGSSSSFSQP I

Sequence ? help Back to Top

Protein Sequence Length: 651 aa Download sequence Send to blast

MLAGCSSSLL SPRHRLRSEA SAQFQACHYP LPSMSTQRLD LPCNFPRKEV SVTRPQSIRA  60
PVVGLSLEKP TLKQTIKLPP PSPEGRREIK AEFWREKGKS LKRRSFRDDD DDGDDEDEDE  120
EGSKRKRSRF DFGESEGFWM QQPGFGIVNF PQLPFSISCS GEEERVCFGG PTDVVSPPPL  180
PPLSHNPWIT EYGGEIEGEP SHHGAVTTTT TTTSGSSSSS DSHSLNVPEY GQFGNGSMNP  240
NPNPGDGSRL VRTHNTNDQT EQQGFELVSF LMSCVEAIQT RNIPAINHFI AKLGEQASPR  300
SPSTISRLTA YFTEALALRV TRLWPRIFHI SVPRELDRFD DESGAAAFRL LNQISPIPKF  360
IHFTANEMLL RAFEGKDKVH IIDFDIKQGL QWASFFQSLA TRANPPSHVR LTGIGESKQE  420
LVETGDRLAN FAEAFNLPFE FHPVVDRLED VRLWMLHVKE GESVAVNCIF QLHKTLYDAN  480
NGAFRDFMGL IRSTNPTALV MAEQEAEHNE PNLEMRVCNS LRYYSAVFDS IDSTLPFDIP  540
ARVKIEEMFG REIRNIVACE GSDRIERHEK FGNWKRKMEQ EGFRGIMRRD DESEVFQSRM  600
LLKMYSNEGY NVEEQGDEGI TLRWMDQPLY TVSLWGSVDA AGSSSSFSQP I

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	4e-64	259	635	10	377	Protein SCARECROW
5b3h_D	4e-64	259	635	10	377	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021863221.1	0.0	scarecrow-like protein 28
Refseq	XP_021863222.1	0.0	scarecrow-like protein 28
Swissprot	Q9CAN3	0.0	SCL28_ARATH; Scarecrow-like protein 28
TrEMBL	A0A0K9QJN0	0.0	A0A0K9QJN0_SPIOL; Uncharacterized protein
STRING	XP_010676544.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63100.1	0.0	GRAS family protein