PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_179740_xwqu.t1

Common Name

SOVF_179740

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

MYB_related

Protein Properties

Length: 290aa MW: 31774.1 Da PI: 9.7961

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_179740_xwqu.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	38.8	2.2e-12	5	55	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT+eE+ l+ +v+++G+g W tI r R+ ++k++w++ Sp_179740_xwqu.t1 5 KQKWTAEEEAALKAGVRKHGSGKWQTILRDPEfshvlSSRSNVDLKDKWRN 55 79*********************************9**********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.231	1	61	IPR017930	Myb domain
SuperFamily	SSF46689	1.05E-15	2	59	IPR009057	Homeodomain-like
SMART	SM00717	3.7E-8	4	59	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.3E-14	5	56	IPR009057	Homeodomain-like
Pfam	PF00249	8.3E-9	5	55	IPR001005	SANT/Myb domain
CDD	cd11660	1.42E-18	6	57	No hit	No description
PROSITE profile	PS51504	24.045	115	186	IPR005818	Linker histone H1/H5, domain H15
SuperFamily	SSF46785	3.16E-16	116	192	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00526	4.0E-14	116	181	IPR005818	Linker histone H1/H5, domain H15
Gene3D	G3DSA:1.10.10.10	1.5E-15	117	186	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00538	5.7E-10	123	179	IPR005818	Linker histone H1/H5, domain H15

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006334	Biological Process	nucleosome assembly
GO:0000786	Cellular Component	nucleosome
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MGAPKQKWTA EEEAALKAGV RKHGSGKWQT ILRDPEFSHV LSSRSNVDLK DKWRNINVTL 60 SGLGSREKAR LALKRNPVPQ LDDKPSVVNK VGSDEKAVED KLVGAPPEVL EVADSKKTYT 120 RLDNLILEAI TTLKEPKGSE RNAIAMYIEE RYWAPPNFSK LLASKLKFMA SNGQLSKVKH 180 RYRISVSLPS SETTRNSSDS KHKDSPRTES KELKVFTRSE VVAELEKMKS LSAHEAAAAA 240 ARAVAEAEAA IAEAEKAARE AEAAEAEAEA AQVFAEAAIK ALNCQKLRAC

Functional Description ? help Back to Top
Source	Description
UniProt	Binds preferentially double-stranded telomeric repeats. {ECO:0000269\|PubMed:19102728}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00626	PBM	Transfer from PK06103.1	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021857040.1	0.0	telomere repeat-binding factor 1-like
Swissprot	Q8VWK4	2e-68	TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBL	A0A0K9QIN7	0.0	A0A0K9QIN7_SPIOL; Uncharacterized protein
STRING	XP_010684267.1	1e-142	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49950.3	3e-68	telomere repeat binding factor 1

Publications ? help Back to Top
Alexandrov NN, et al. Features of Arabidopsis genes and genome discovered using full-length cDNAs. Plant Mol. Biol., 2006. 60(1): p. 69-85 [PMID:16463100] Schrumpfová PP, et al. Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase. Plant J., 2014. 77(5): p. 770-81 [PMID:24397874] Liang SC, et al. Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2. PLoS Genet., 2015. 11(12): p. e1005660 [PMID:26642436] Fulcher N,Riha K Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana. Front Genet, 2015. 6: p. 349 [PMID:26779251] Kotliński M, et al. Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain. Plant Physiol., 2017. 174(1): p. 27-34 [PMID:28298478]