PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_180450_gwuo.t1
Common NameSOVF_180450
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family NF-YA
Protein Properties Length: 50aa    MW: 5744.56 Da    PI: 11.0235
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_180450_gwuo.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA52.61.5e-161750236
          CBFB_NFYA  2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrk 36
                       ep+YVNaKQy++Il+RRq+Rak+e e++   ksrk
  Sp_180450_gwuo.t1 17 EPIYVNAKQYHGILRRRQSRAKAEMENRA-VKSRK 50
                       8***************************9.88886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5115220.791550IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.7E-131750IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS0068602040IPR018362CCAAT-binding factor, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 50 aa     Download sequence    Send to blast
MHSSNGVALP AESSKYEPIY VNAKQYHGIL RRRQSRAKAE MENRAVKSRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021858672.11e-27nuclear transcription factor Y subunit A-7-like
TrEMBLA0A0K9QGZ11e-27A0A0K9QGZ1_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010672780.11e-20(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.16e-16nuclear factor Y, subunit A7