PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_181990_prci.t1

Common Name

SOVF_181990

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

C2H2

Protein Properties

Length: 573aa MW: 60711.6 Da PI: 8.6472

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_181990_prci.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17	1.7e-05	74	96	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Sp_181990_prci.t1 74 FVCEICNKGFQRDQNLQLHRRGH 96 89*******************88 PP
2	zf-C2H2	15.3	5.8e-05	150	172	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k Hi+ + Sp_181990_prci.t1 150 WKCEKCSKKYAVQSDWKAHIKIC 172 58******************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.38E-7	73	96	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.9E-5	73	96	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.949	74	96	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.017	74	96	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	76	96	IPR007087	Zinc finger, C2H2
SMART	SM00355	85	115	145	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.4E-5	138	171	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.38E-7	145	170	No hit	No description
SMART	SM00355	77	150	170	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009937	Biological Process	regulation of gibberellic acid mediated signaling pathway
GO:0010029	Biological Process	regulation of seed germination
GO:0010431	Biological Process	seed maturation
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 573 aa Download sequence Send to blast
MPADLDDSSS PKTTMSNTTA VSGEAASNSV ISTGDQSEPL KPPLKKKRNQ PGMPDPDAEV 60 IVLSPKTLMA TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW KLRQRSSKEV KKRVYVCPEV 120 SCVHHDPSRA LGDLTGIKKH YSRKHGEKKW KCEKCSKKYA VQSDWKAHIK ICGTREYKCD 180 CGTLFSRRDS FITHRAFCDA LAEESARNQP LNNGNKNTTK MEIDSKTSIT ATAIASPPPP 240 PPPQLPPTLP PVPPVLQQQQ LPPPSPLPAP RKSPPPAPPT TMVASILPIQ SSVQGLPENP 300 IPVLEDVLPP PPPPPVAVVV TAGLNVSSSV SSSSCSSSSG ANTSSSVFAT LFASSSATPP 360 SLPSSHPNPG FSDFIQTMTR HECPPPELPQ HGPTEPISLC LSSSHGSSIF GPAGPERRQY 420 APPPQPAMSA TALLQKAAQM GANGGSLLRG LGLVSSTSST GPSESLQWTS RQIEPDHSSP 480 VQSSLGLGLP CDEGSGLKEL MIGNSSMFGP KQPTLDFLGL GMAAGGSPNG GLSALITSMG 540 NGLDVAGGXR LHSEEPSFPV KTPDGTRDVR NKE

Sequence ? help Back to Top

Protein Sequence Length: 573 aa Download sequence Send to blast

MPADLDDSSS PKTTMSNTTA VSGEAASNSV ISTGDQSEPL KPPLKKKRNQ PGMPDPDAEV  60
IVLSPKTLMA TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW KLRQRSSKEV KKRVYVCPEV  120
SCVHHDPSRA LGDLTGIKKH YSRKHGEKKW KCEKCSKKYA VQSDWKAHIK ICGTREYKCD  180
CGTLFSRRDS FITHRAFCDA LAEESARNQP LNNGNKNTTK MEIDSKTSIT ATAIASPPPP  240
PPPQLPPTLP PVPPVLQQQQ LPPPSPLPAP RKSPPPAPPT TMVASILPIQ SSVQGLPENP  300
IPVLEDVLPP PPPPPVAVVV TAGLNVSSSV SSSSCSSSSG ANTSSSVFAT LFASSSATPP  360
SLPSSHPNPG FSDFIQTMTR HECPPPELPQ HGPTEPISLC LSSSHGSSIF GPAGPERRQY  420
APPPQPAMSA TALLQKAAQM GANGGSLLRG LGLVSSTSST GPSESLQWTS RQIEPDHSSP  480
VQSSLGLGLP CDEGSGLKEL MIGNSSMFGP KQPTLDFLGL GMAAGGSPNG GLSALITSMG  540
NGLDVAGGXR LHSEEPSFPV KTPDGTRDVR NKE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-38	146	215	3	72	Zinc finger protein JACKDAW
5b3h_F	2e-38	146	215	3	72	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00592	DAP	Transfer from AT5G66730	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021839373.1	0.0	protein indeterminate-domain 2-like
Swissprot	Q9LVQ7	1e-162	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	A0A0K9QGD0	0.0	A0A0K9QGD0_SPIOL; Uncharacterized protein
STRING	XP_010680830.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-107	indeterminate(ID)-domain 2

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]