PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_182220_jxzj.t1

Common Name

SOVF_182220

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

BES1

Protein Properties

Length: 690aa MW: 78349.7 Da PI: 6.3455

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_182220_jxzj.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	150.4	1.5e-46	82	213	3	137
DUF822 3 sgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspessl 94 +gr++++kE+E++k+RER+RRai+++++aGLR++Gn++lp+raD+n+Vl+AL+reAGw+ve+DGttyr + p ++ g +s s+l Sp_182220_jxzj.t1 82 KGRREREKEKERTKLRERHRRAITSRMLAGLRQYGNFHLPARADMNDVLAALAREAGWMVEPDGTTYRSSPPP----SQLGGLPVRSSDSPL 169 79****************************************************************44333....466677777777777 PP DUF822 95 q.sslkssalaspvesysaspksssfpspssldsislasaasll 137 + sslk+++++ ++ + +++ ++ +sp+slds+ +++ ++ Sp_182220_jxzj.t1 170 SaSSLKNCSMKPSLNCQPTVLGIDENLSPASLDSVVVTEMETKN 213 77899****************************998773333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	1.8E-47	82	223	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
SuperFamily	SSF51445	2.21E-155	247	684	IPR017853	Glycoside hydrolase superfamily
Gene3D	G3DSA:3.20.20.80	4.9E-167	249	681	IPR013781	Glycoside hydrolase, catalytic domain
Pfam	PF01373	8.2E-78	273	638	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.8E-53	286	300	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.8E-53	307	325	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.8E-53	329	350	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.8E-53	422	444	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.8E-53	495	514	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.8E-53	529	545	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.8E-53	546	557	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.8E-53	564	587	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.8E-53	602	624	IPR001554	Glycoside hydrolase, family 14

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0048831	Biological Process	regulation of shoot system development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 690 aa Download sequence Send to blast
MNGAGEDTTP ATFDHHEIHQ NPLNSNLQIP IPGPNPNINN FSHSNSHQYH LISPPQPQPQ 60 TNRRPRGFAV TAGNSSGSGD VKGRREREKE KERTKLRERH RRAITSRMLA GLRQYGNFHL 120 PARADMNDVL AALAREAGWM VEPDGTTYRS SPPPSQLGGL PVRSSDSPLS ASSLKNCSMK 180 PSLNCQPTVL GIDENLSPAS LDSVVVTEME TKNEKNTSTS NIDSPESLEA HQLIQHVQSN 240 LCENDYSGTP HVPVYIKLSS GIINSYCQLV DPEGIRQELK HMKSLNVDGV VVDCWWGIVE 300 GWSPQKYTWL GYRELFMIIR EFQLKVQVVL AFHEYGGSDS GNVFISLPHW VLEIGKDNQD 360 IFFTDREGRR NTECISWGID KERVLRGRTG IEVYFDLMRS FRSEFDDIFA DDLITAVEIG 420 LGASGELKFP SFPERLGWRY PGIGEFQCYD RYLQQNLRKA AKLRGHSFWA RGPDNAGHYN 480 SRPPETGFFC EKGDYESYFG RFFLHWYAQM LIDHADNVLS LASLAFEETQ IIVKIPAVYW 540 WYKTPSHAAE LTAGYYNPTN RDGYSPVFEV FKKHSVAVKY VCPRSRIHCR ENDESFSDPE 600 SLSWQVLSAA WDCGLTIAGQ NADPCFDRGE HIKMIETSKP NNDPDRRHFS FFVYQLPSPF 660 VQRTYCYSEL DNFIKNMHGE NGCHEEPAQV

Sequence ? help Back to Top

Protein Sequence Length: 690 aa Download sequence Send to blast

MNGAGEDTTP ATFDHHEIHQ NPLNSNLQIP IPGPNPNINN FSHSNSHQYH LISPPQPQPQ  60
TNRRPRGFAV TAGNSSGSGD VKGRREREKE KERTKLRERH RRAITSRMLA GLRQYGNFHL  120
PARADMNDVL AALAREAGWM VEPDGTTYRS SPPPSQLGGL PVRSSDSPLS ASSLKNCSMK  180
PSLNCQPTVL GIDENLSPAS LDSVVVTEME TKNEKNTSTS NIDSPESLEA HQLIQHVQSN  240
LCENDYSGTP HVPVYIKLSS GIINSYCQLV DPEGIRQELK HMKSLNVDGV VVDCWWGIVE  300
GWSPQKYTWL GYRELFMIIR EFQLKVQVVL AFHEYGGSDS GNVFISLPHW VLEIGKDNQD  360
IFFTDREGRR NTECISWGID KERVLRGRTG IEVYFDLMRS FRSEFDDIFA DDLITAVEIG  420
LGASGELKFP SFPERLGWRY PGIGEFQCYD RYLQQNLRKA AKLRGHSFWA RGPDNAGHYN  480
SRPPETGFFC EKGDYESYFG RFFLHWYAQM LIDHADNVLS LASLAFEETQ IIVKIPAVYW  540
WYKTPSHAAE LTAGYYNPTN RDGYSPVFEV FKKHSVAVKY VCPRSRIHCR ENDESFSDPE  600
SLSWQVLSAA WDCGLTIAGQ NADPCFDRGE HIKMIETSKP NNDPDRRHFS FFVYQLPSPF  660
VQRTYCYSEL DNFIKNMHGE NGCHEEPAQV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wdq_A	1e-119	251	689	11	453	Beta-amylase
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00543	DAP	Transfer from AT5G45300	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021858576.1	0.0	beta-amylase 8
Swissprot	Q9FH80	0.0	BAM8_ARATH; Beta-amylase 8
TrEMBL	A0A0K9QGA3	0.0	A0A0K9QGA3_SPIOL; Beta-amylase
STRING	XP_010676684.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45300.1	0.0	beta-amylase 2

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]