PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_182620_smwd.t1
Common NameSOVF_182620
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family Trihelix
Protein Properties Length: 437aa    MW: 50277.4 Da    PI: 7.4798
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_182620_smwd.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix75.39.6e-24116213186
           trihelix   1 rWtkqevlaLiearremeerlrr.gk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcp 80 
                        +W  ++v++Li+a++++ e+    g+           kk++W+++sk+m+ergf +sp+qC++k+++lnkrykk++e+ +k+ +++++++ +
  Sp_182620_smwd.t1 116 KWNSSMVKLLITAVSYLSEDAVFeGCsqgrrkylnlHKKGKWKSISKVMAERGFFVSPQQCEDKFNDLNKRYKKLNEILGKGtSCQVVEKPA 207
                        7**************998887752446677888888**********************************************6699999999 PP

           trihelix  81 yfdqle 86 
                        ++d ++
  Sp_182620_smwd.t1 208 LLDMMD 213
                        999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.6E-21114238No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MDNNLSLANM MPGGGSAYVG SDMQGSIRVN HHQNPRSLQL GQGLMTQPSS MHEVFPLKMG  60
QGHKRDQPNS MADYNKGERG KTSPTDEDEH SSNGEGMDGQ SDPSKGKKVP QWHRVKWNSS  120
MVKLLITAVS YLSEDAVFEG CSQGRRKYLN LHKKGKWKSI SKVMAERGFF VSPQQCEDKF  180
NDLNKRYKKL NEILGKGTSC QVVEKPALLD MMDHLSDKTK DEVRKILSSK HLFYEELCSY  240
HNNNRLHLPH DPALQQSLQL ALRSRDDTDT DFRKHLHGEA IEDDDGEDSE DHEDYGENCS  300
KGAYPLSGDP SKRMKQGQGL ENSDFRPQST QDFSKSFQLQ LQNPFADMHP EFPENQKAAL  360
LQKQRLKAQS FQLEEQKLQI NSEALELEKQ RFKWQRFCKR KDRELEKLKI ENDRMKLDNE  420
RLALELKRME MSFTSNH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021857786.10.0uncharacterized protein LOC110797005
TrEMBLA0A0K9QGA50.0A0A0K9QGA5_SPIOL; Uncharacterized protein
STRINGVIT_18s0072g00690.t011e-164(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-120sequence-specific DNA binding transcription factors