PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_183770_oiew.t1

Common Name

S1FA

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

S1Fa-like

Protein Properties

Length: 70aa MW: 7700.39 Da PI: 10.9143

Description

S1Fa-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_183770_oiew.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	S1FA	146.6	4.4e-46	2	70	2	70
S1FA 2 avakveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 av++veakGlnPGlivllv+gglll+flvgn+ily+yaqknlPP+kkkP+skkk+kre+lkqGva+PGe Sp_183770_oiew.t1 2 AVNEVEAKGLNPGLIVLLVIGGLLLTFLVGNFILYTYAQKNLPPKKKKPISKKKMKRERLKQGVAPPGE 70 789*****************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD019013	3.0E-6	1	70	No hit	No description
Pfam	PF04689	7.0E-40	6	70	IPR006779	DNA binding protein S1FA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 70 aa Download sequence Send to blast
MAVNEVEAKG LNPGLIVLLV IGGLLLTFLV GNFILYTYAQ KNLPPKKKKP ISKKKMKRER 60 LKQGVAPPGE

Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	X79543	1e-115	X79543.1 S.oleracea s1fa mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021839302.1	7e-42	DNA-binding protein S1FA
Swissprot	P42552	6e-43	S1FA_SPIOL; DNA-binding protein S1FA
TrEMBL	A0A0K9QHJ6	2e-40	A0A0K9QHJ6_SPIOL; Uncharacterized protein
STRING	XP_010104121.1	3e-23	(Morus notabilis)

Publications ? help Back to Top
Zhou DX,Bisanz-Seyer C,Mache R Molecular cloning of a small DNA binding protein with specificity for a tissue-specific negative element within the rps1 promoter. Nucleic Acids Res., 1995. 23(7): p. 1165-9 [PMID:7739894]