PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_184400_kmji.t1
Common NameSOVF_184400
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 244aa    MW: 27031.2 Da    PI: 5.0708
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_184400_kmji.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.62.7e-09123169455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         h ++Er+RR+ + + f  L  ++P +     kK +K ++L +A++++++Lq
  Sp_184400_kmji.t1 123 DHIMAERKRRELLSQLFISLSAIVPGL-----KKIDKTTVLGEAIKHMRQLQ 169
                        699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.03E-13110178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.256119168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-12123177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-7123169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.64E-9124173No hitNo description
SMARTSM003539.6E-10125174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
METMEAWIAE LEIDVDPIFS NPYHQSDTMD EQLLAVTSDT ASPQEDFDCD LIEQFILSPP  60
HHHLSDFNDD DNNNDDDNDG VSFNVQESPP LMKQKKETKK KKKKEAVSSG STKKRRHPRQ  120
VQDHIMAERK RRELLSQLFI SLSAIVPGLK KIDKTTVLGE AIKHMRQLQE KVKVLEEIAA  180
KRIVESVVID YSASGGSNGG GGSGDSGDSG DGGYSDRSPP AIEVKTTSNT VLLRICCDKH  240
NGLL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113131KRRHPRQVQDHIMAERKRR
2127132ERKRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021839235.11e-118transcription factor bHLH25-like
TrEMBLA0A0K9QFN51e-180A0A0K9QFN5_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010666979.12e-54(Beta vulgaris)
STRINGXP_010683065.12e-54(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.18e-25bHLH family protein