PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_184490_ogxh.t1

Common Name

SOVF_184490

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

C3H

Protein Properties

Length: 484aa MW: 55576.2 Da PI: 9.1831

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_184490_ogxh.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.4	1.9e-06	459	480	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 lCr++ + G C yG rCkF H+ Sp_184490_ogxh.t1 459 QLCRHYPK-GRCYYGTRCKFLHV 480 69****.***********6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.720.30	1.0E-8	85	131	IPR003034	SAP domain
SuperFamily	SSF68906	1.67E-7	85	130	No hit	No description
SMART	SM00513	8.2E-4	96	130	IPR003034	SAP domain
PROSITE profile	PS50800	9.666	96	130	IPR003034	SAP domain
Pfam	PF02037	2.3E-9	97	129	IPR003034	SAP domain
Gene3D	G3DSA:4.10.1000.10	7.1E-6	450	479	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.49E-5	455	479	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.258	455	482	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence Send to blast
MAKSHGNAQN PIELEEDDYT EMEDSDYDEF DSDDSEEDPS YIHALDKAQS NFINLSVNSR 60 DDDEISVTEE TSAPKLGIKD IKDLEEIQKV IDGGLVEKLK VEQCKVYLRK HGLRLTGKKD 120 TLIQRIKEHS EILNGGGEKK YPPSSFVLNC KGDACMGDIV MFEQTVYEGF SIVSRSATGP 180 PCGKRIVAGR IVKESYGAAK QQHTFTVEVL WSKGQKPLPP LHPLLIKGRN LYRLNTLRQR 240 WEDESERQRV LNEKHSRGNA ARSNREVRIQ KKISRKELKG TRNATDHISN HDSRNVESKA 300 QKKQTVVKKT QQQQQQQQQQ IKVDKENLYA GLPMLQPSQQ NKPSMPPSDL HRVPTSRVCF 360 AFKDQNSSLS HHGPPQLQHS RPQLQQHSRQ QYYMEYNKNS VQPPNSFQQK ASSTSTCNFS 420 QRPMSRFSEN ESFITSAHYI MALSNNYQHP QHGQNHQQQL CRHYPKGRCY YGTRCKFLHV 480 SDRN

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence Send to blast

MAKSHGNAQN PIELEEDDYT EMEDSDYDEF DSDDSEEDPS YIHALDKAQS NFINLSVNSR  60
DDDEISVTEE TSAPKLGIKD IKDLEEIQKV IDGGLVEKLK VEQCKVYLRK HGLRLTGKKD  120
TLIQRIKEHS EILNGGGEKK YPPSSFVLNC KGDACMGDIV MFEQTVYEGF SIVSRSATGP  180
PCGKRIVAGR IVKESYGAAK QQHTFTVEVL WSKGQKPLPP LHPLLIKGRN LYRLNTLRQR  240
WEDESERQRV LNEKHSRGNA ARSNREVRIQ KKISRKELKG TRNATDHISN HDSRNVESKA  300
QKKQTVVKKT QQQQQQQQQQ IKVDKENLYA GLPMLQPSQQ NKPSMPPSDL HRVPTSRVCF  360
AFKDQNSSLS HHGPPQLQHS RPQLQQHSRQ QYYMEYNKNS VQPPNSFQQK ASSTSTCNFS  420
QRPMSRFSEN ESFITSAHYI MALSNNYQHP QHGQNHQQQL CRHYPKGRCY YGTRCKFLHV  480
SDRN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021865531.1	0.0	zinc finger CCCH domain-containing protein 62-like
TrEMBL	A0A0K9QHJ2	0.0	A0A0K9QHJ2_SPIOL; Uncharacterized protein
STRING	XP_010685268.1	1e-173	(Beta vulgaris)