PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_184540_kwch.t1
Common NameSOVF_184540
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bZIP
Protein Properties Length: 359aa    MW: 40602.6 Da    PI: 4.4818
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_184540_kwch.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.83.2e-10180223346
                        XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 
                         +k+ +r  +NR AA rsR+RKk++++ Le k+k +eae ++L 
  Sp_184540_kwch.t1 180 LSKKRKRQLRNRDAALRSRERKKMYVKDLEMKSKYMEAECRRLG 223
                        57999**********************************98664 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003380.0011178242IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.5E-10179237No hitNo description
PROSITE profilePS502179.484180222IPR004827Basic-leucine zipper domain
PfamPF077164.5E-8181222IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.5E-10182237No hitNo description
CDDcd147041.20E-14183234No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0030968Biological Processendoplasmic reticulum unfolded protein response
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MELEDELNQI DWDNMFVDIP FLEDDFRIFE DVSPSLEVVE DEVATTTKIA SGPTVESWIE  60
ELLMKDDDDE HNNSNQAAVE VLGDDFLWSD LLVDSHQEDC LPSDDHRDSS YASPSPTTPP  120
FEDKNSSTCS NSEGNAVQIA TTSDNYDISG KEIPNFESNG ENCKSGDDAL DLDDSDRDPL  180
SKKRKRQLRN RDAALRSRER KKMYVKDLEM KSKYMEAECR RLGRLLQCCY AENQMLRISL  240
GSAYGASLTK PESAVLLLES LLLVSLVWLM VNICLLPLHK LSPQNQGAVP HGSVERKEQE  300
SAAAPKGKVT KVTELWVTLC FMRSKRCRAS RTKMKSDMNA LCHASTETPL CCFQFSWYR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182201KRKRQLRNRDAALRSRERKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00019PBMTransfer from AT1G42990Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021855657.10.0bZIP transcription factor 60
TrEMBLA0A0K9QFM60.0A0A0K9QFM6_SPIOL; Uncharacterized protein
STRINGXP_010684737.11e-108(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G42990.12e-14basic region/leucine zipper motif 60