PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_186320_tupj.t1
Common NameSOVF_186320
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MYB_related
Protein Properties Length: 220aa    MW: 25571.6 Da    PI: 8.5884
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_186320_tupj.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.18.6e-182570148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       rg++T+ E++l ++++ q+G++ W++Iar+++ gRt++++k++w++++
  Sp_186320_tupj.t1 25 RGKMTPHEEKLVLELHSQWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 70
                       89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.681119IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.5E-9531IPR009057Homeodomain-like
SuperFamilySSF466891.42E-21575IPR009057Homeodomain-like
PROSITE profilePS5129425.6162074IPR017930Myb domain
SMARTSM007171.9E-162472IPR001005SANT/Myb domain
PfamPF002492.0E-152569IPR001005SANT/Myb domain
CDDcd001673.01E-112770No hitNo description
Gene3DG3DSA:1.10.10.607.0E-203271IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MIGLKRTGKS CRLRWVNYLH PGLKRGKMTP HEEKLVLELH SQWGNRWSRI ARRLPGRTDN  60
EIKNYWRTHM RKKAQEKKRE TSPSSSSTTT TTTTNSSTSS NNRAVNSKTA TETTESFDST  120
VVADMSSMQG KKYQKDEREE EEFYSMDDIW KDITSEEPIK PVYNGYREGS NFSCPPMASP  180
LWEYCPDTLW RLEGDESKMF FPPSDQFVPC YQHENMSLTG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-1767437105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021865246.11e-165transcription factor MYB48 isoform X2
SwissprotQ9LX826e-66MYB48_ARATH; Transcription factor MYB48
TrEMBLA0A0K9QEZ61e-164A0A0K9QEZ6_SPIOL; Uncharacterized protein
STRINGXP_010685834.11e-115(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.44e-65myb domain protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]