PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_186840_jexc.t1
Common NameSOVF_186840
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family GRAS
Protein Properties Length: 624aa    MW: 68640.1 Da    PI: 5.0131
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_186840_jexc.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS358.41.1e-1092576232373
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                        + +LlecA+  + +  ++a + L rl++ +s++gdp+qR+a+yfteAL+ rl+         l++ + +++ s+e + ++k++++++P+ kf
  Sp_186840_jexc.t1 257 IAALLECARLAELDPERAAVKSLVRLRDSVSQHGDPIQRVAFYFTEALSCRLSP-------PLSSPTVETTASEECTLSYKALNDACPFSKF 341
                        689**************************************************9.......34444444445899999************** PP

               GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlv 182
                        +hltaNqaIlea++g+e++Hi+Df+i qG+QW+aLlqaLa+Rp+g+p ++Ri g+ +p+ g   + +l +tg+rL++fA+ l+++fef++ +
  Sp_186840_jexc.t1 342 AHLTANQAILEATDGAEKIHIVDFGIVQGVQWAALLQALATRPAGKPnKIRISGIPAPALGesPTSALFATGNRLREFAKVLELNFEFEP-I 432
                        *******************************************76666**********99998999************************.7 PP

               GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                         + +++l+ +++rv+p+E+l +n++lql++llde++   +   +vLkl ksl+Pk+v++ e e+ +n+  + +rf  a++yy+a+f+sle +
  Sp_186840_jexc.t1 433 LTPVHELTESSFRVDPDEVLTINFMLQLYNLLDETTVEVE---TVLKLAKSLNPKIVTLGEYEVGLNQVGYSTRFKTAVKYYTAVFESLEPN 521
                        99******************************87776666...9************************************************ PP

               GRAS 275 lpreseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWk 363
                        l res +r+ vEr ++gr+i+  v  e +  rrer+e +e+W++ +e+aGF++v++s++a++qak ll +++ s  y++ ++   ++ l W+
  Sp_186840_jexc.t1 522 LDRESVDRVQVERLIFGRRIMGSVGPELQGsRRERMECKEEWKRLMENAGFEAVRVSNYANSQAKILLWNYNySSSYKLVDSPPGFLsLAWN 613
                        *************************998766*****************************************9999**9988766666**** PP

               GRAS 364 drpLvsvSaW 373
                        d pL++vS+W
  Sp_186840_jexc.t1 614 DVPLLTVSSW 623
                        ********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.072230602IPR005202Transcription factor GRAS
PfamPF035143.7E-107257623IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 624 aa     Download sequence    Send to blast
MAYMCADSGN LMAIAQQVIK QQQQQQQEQQ QQTHHQQHHH HHHHQSQFLA SNNPFFLNPW  60
PTSVPPMSTS PPPPLGFGGG AFHDPFQVGG PPPDATEPWQ LDHPSSNFRF ADFYGGAPGE  120
FDSDEWMESL MSAGGAADSG AVTETPNLQS TGGCEAWQGG SAAADFSLYG GDPFAATCPT  180
RMNVTLSPPS DLTRVIYSDA DKTVTTQQWV QPSPPLKDPP PPQIQAEPPQ NRNAAVSVAV  240
ASSSSPEKQL HSWPPLIAAL LECARLAELD PERAAVKSLV RLRDSVSQHG DPIQRVAFYF  300
TEALSCRLSP PLSSPTVETT ASEECTLSYK ALNDACPFSK FAHLTANQAI LEATDGAEKI  360
HIVDFGIVQG VQWAALLQAL ATRPAGKPNK IRISGIPAPA LGESPTSALF ATGNRLREFA  420
KVLELNFEFE PILTPVHELT ESSFRVDPDE VLTINFMLQL YNLLDETTVE VETVLKLAKS  480
LNPKIVTLGE YEVGLNQVGY STRFKTAVKY YTAVFESLEP NLDRESVDRV QVERLIFGRR  540
IMGSVGPELQ GSRRERMECK EEWKRLMENA GFEAVRVSNY ANSQAKILLW NYNYSSSYKL  600
VDSPPGFLSL AWNDVPLLTV SSWH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1462556243375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021839054.10.0scarecrow-like protein 4
SwissprotA0A024B7I00.0SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLA0A0K9QGY40.0A0A0K9QGY4_SPIOL; Uncharacterized protein
STRINGXP_010679714.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein