PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_188050_cydp.t1
Common NameSOVF_188050
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bZIP
Protein Properties Length: 156aa    MW: 17504 Da    PI: 4.2681
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_188050_cydp.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_146.96.1e-151541063
                       HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1 10 kqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                       +q+NRe+ArrsR+RK+  ++ L+  v+eL+a+N++ +++ ++ ++++ ++++e+
  Sp_188050_cydp.t1  1 MQSNRESARRSRLRKQNHLDDLAVQVAELKAQNSRIISTTNTSTQLYLEVEAEN 54
                       79********************************************99998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.4E-7156IPR004827Basic-leucine zipper domain
PfamPF001701.5E-10147IPR004827Basic-leucine zipper domain
CDDcd147021.00E-16147No hitNo description
SuperFamilySSF579599.64E-9147No hitNo description
Gene3DG3DSA:1.20.5.1709.0E-9371No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MQSNRESARR SRLRKQNHLD DLAVQVAELK AQNSRIISTT NTSTQLYLEV EAENSVLRAQ  60
LSELSNRLQS LNDIINCLSN NNVHGNINNN NNNNNNNNVM RITTSTTSDG CSSDDQEISL  120
IGSFDVDLEF DDDFSMNSWG FSFANYPTTT PDAFMC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1814RRSRLRK
2815RRSRLRKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021838013.12e-92bZIP transcription factor 11-like
TrEMBLA0A0K9QG841e-108A0A0K9QG84_SPIOL; Uncharacterized protein
STRINGXP_010679785.18e-50(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34590.14e-23G-box binding factor 6