PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_188220_zekp.t1
Common NameSOVF_188220
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family B3
Protein Properties Length: 188aa    MW: 21854.6 Da    PI: 3.9939
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_188220_zekp.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.91.6e-12491195
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                 B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                       ffkv+     ++s +l+lp  f ++ +g+ ++   ++   ++ + W +++   + +gr  +++ W++Fv +n L  g+f+vFk++g+++f  ++
  Sp_188220_zekp.t1  4 FFKVF--QPQTSSENLMLPPAFESKLSGEIPS--RVV-LKKNKKIWLINV--VRIDGRLHFEGAWSKFVLDNSLSFGEFMVFKYNGQRTFDVLI 90
                       88999..44455555*******9888555333..355.56699*******..99999*99************************9987774444 PP

                       E CS
                 B3 95 k 95
                        
  Sp_188220_zekp.t1 91 L 91
                       3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-18196IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.87E-18196IPR015300DNA-binding pseudobarrel domain
CDDcd100171.02E-7291No hitNo description
PROSITE profilePS5086311.251294IPR003340B3 DNA binding domain
PfamPF023625.2E-10490IPR003340B3 DNA binding domain
SMARTSM010191.1E-8494IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
HPQFFKVFQP QTSSENLMLP PAFESKLSGE IPSRVVLKKN KKIWLINVVR IDGRLHFEGA  60
WSKFVLDNSL SFGEFMVFKY NGQRTFDVLI LGRDGCEKES GNTEETEDSE EEPVVKHVDD  120
DDDDYGNAEE TEESEEEHVK HVDDDYEEDE DDEDEDEDDD DDDYTMPKHF LPKYNYNSVQ  180
GKTNSIWG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021855066.12e-97B3 domain-containing protein REM20-like isoform X1
RefseqXP_021855067.12e-97B3 domain-containing protein REM20-like isoform X1
RefseqXP_021855068.12e-97B3 domain-containing protein REM20-like isoform X1
RefseqXP_021855069.12e-97B3 domain-containing protein REM20-like isoform X1
RefseqXP_021855070.12e-97B3 domain-containing protein REM20-like isoform X1
RefseqXP_021855072.12e-97B3 domain-containing protein REM20-like isoform X1
TrEMBLA0A0K9QGH91e-134A0A0K9QGH9_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010691759.14e-36(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.15e-17B3 family protein