PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_188360_cegd.t1
Common NameSOVF_188360
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family ERF
Protein Properties Length: 227aa    MW: 25385.6 Da    PI: 6.6712
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_188360_cegd.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.32.5e-1566114355
                AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        ++GVr  +  g+Wv+e+r+p   +k+ r++lg++ tae Aa+a++ a+++l+g
  Sp_188360_cegd.t1  66 FHGVR-ERDGGKWVCEVREP---NKKSRIWLGTYPTAELAARAYDVAALALKG 114
                        89**9.5559******9998...347***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.25E-2564124No hitNo description
PfamPF008477.2E-1164114IPR001471AP2/ERF domain
SMARTSM003806.2E-2465128IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-1865124IPR016177DNA-binding domain
PROSITE profilePS5103221.27265122IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.8E-2865124IPR001471AP2/ERF domain
PRINTSPR003674.3E-76677IPR001471AP2/ERF domain
PRINTSPR003674.3E-788104IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MNSHISPQYS PPSSCGGESD DAISSDSPTN QSAPPLSRLL SGGAACVPHK RKTGRKKFKE  60
TRHPIFHGVR ERDGGKWVCE VREPNKKSRI WLGTYPTAEL AARAYDVAAL ALKGDKTALN  120
FADSAWLAPR ARSSSARDIR LAALQATRSD LRNEEKEETS RSYDVVKCVE EEFNKELFLD  180
EEIIFNMPIF IDSMAAGMLL TPPSLKRGMN WDEDEANYCH IDLNLWQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:17136305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By calcium ion, methyl-jasmonate (MeJA), cold, drought, and high salinity stress. {ECO:0000269|PubMed:17136305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021846035.11e-166dehydration-responsive element-binding protein 1F-like
SwissprotA2WZI44e-50DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F
SwissprotQ8S9Z54e-50DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F
TrEMBLA0A0K9QEG91e-168A0A0K9QEG9_SPIOL; Uncharacterized protein
STRINGXP_010686195.17e-96(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.15e-41C-repeat-binding factor 4
Publications ? help Back to Top
  1. Wang Q, et al.
    Overexpression of a rice OsDREB1F gene increases salt, drought, and low temperature tolerance in both Arabidopsis and rice.
    Plant Mol. Biol., 2008. 67(6): p. 589-602
    [PMID:18470484]
  2. Liu HH,Wang YG,Wang SP,Li HJ
    Cloning and characterization of peanut allene oxide cyclase gene involved in salt-stressed responses.
    Genet. Mol. Res., 2015. 14(1): p. 2331-40
    [PMID:25867379]