PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_188650_njsy.t1

Common Name

SOVF_188650

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

MYB_related

Protein Properties

Length: 478aa MW: 53516.7 Da PI: 5.8264

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_188650_njsy.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.3	3.7e-08	373	419	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqky 47 +WT +E lvd+ q+G g+W+++ rt+ +Rt+ +++++w+++ Sp_188650_njsy.t1 373 AWTLDEVVALVDGMSQFGVGQWTAVKRTFFssSRRTATDIRDKWRNL 419 8*****************************9**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.936	364	424	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-9	366	426	IPR009057	Homeodomain-like
SMART	SM00717	9.7E-7	370	422	IPR001005	SANT/Myb domain
CDD	cd11660	4.34E-17	372	421	No hit	No description
SuperFamily	SSF46689	1.09E-12	373	430	IPR009057	Homeodomain-like
Pfam	PF13921	4.1E-6	374	431	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 478 aa Download sequence Send to blast
MNEVKEGDHY FANLAYGGSD AGHIWADPKE DKASALYFDA NFEKAFKIDD ISSVFHYELL 60 AENGGLTSYM TDEGKGKILC SDFDGILLED ELTNLPLAVS ISRASEDHYL DVDFAKKVPD 120 LDCKFYDELS VGTLRSEVNS PETSNEEVGV SESSIIAPRC FNDQFGKTTA DAMHGNSGRK 180 CWYQRPVEDN MGLKCSVTCD IQDVQETNDV RNTLEIGSSF DDDGKKTHVS FTSVKSLYGS 240 VCTHDEVGPP PSQCTDVEDF CADDPSTDSC AETKIIRARQ RRLCRPPQRY LDGSPSLNLK 300 LHNAKKHPSS LSKDKDLGVG SLKKYHRKSV EIKASKTWAS DMELDSDEEY EPVESSFNIR 360 NLKRNDRRKS CKAWTLDEVV ALVDGMSQFG VGQWTAVKRT FFSSSRRTAT DIRDKWRNLV 420 KTNCRSSKGT KDDQRNCSHL LPEPVIERVR EIASSPSLKP RHKSSRKLSG LRCPDLPP

Sequence ? help Back to Top

Protein Sequence Length: 478 aa Download sequence Send to blast

MNEVKEGDHY FANLAYGGSD AGHIWADPKE DKASALYFDA NFEKAFKIDD ISSVFHYELL  60
AENGGLTSYM TDEGKGKILC SDFDGILLED ELTNLPLAVS ISRASEDHYL DVDFAKKVPD  120
LDCKFYDELS VGTLRSEVNS PETSNEEVGV SESSIIAPRC FNDQFGKTTA DAMHGNSGRK  180
CWYQRPVEDN MGLKCSVTCD IQDVQETNDV RNTLEIGSSF DDDGKKTHVS FTSVKSLYGS  240
VCTHDEVGPP PSQCTDVEDF CADDPSTDSC AETKIIRARQ RRLCRPPQRY LDGSPSLNLK  300
LHNAKKHPSS LSKDKDLGVG SLKKYHRKSV EIKASKTWAS DMELDSDEEY EPVESSFNIR  360
NLKRNDRRKS CKAWTLDEVV ALVDGMSQFG VGQWTAVKRT FFSSSRRTAT DIRDKWRNLV  420
KTNCRSSKGT KDDQRNCSHL LPEPVIERVR EIASSPSLKP RHKSSRKLSG LRCPDLPP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021856762.1	0.0	uncharacterized protein LOC110796042
TrEMBL	A0A0K9QGE2	0.0	A0A0K9QGE2_SPIOL; Uncharacterized protein
STRING	XP_010684090.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.2	1e-17	TRF-like 6