PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_190130_yqsr.t1

Common Name

SOVF_190130

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

LBD

Protein Properties

Length: 179aa MW: 20064.6 Da PI: 6.7788

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_190130_yqsr.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	144.1	4.1e-45	8	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +Ca+Ck+lrr+CakdCv+apyfp+++p+kfa+vhk+FGasnv+k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lq+q++ql+ Sp_190130_yqsr.t1 8 PCASCKLLRRRCAKDCVFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPLHQRADAVSSLVYEANARMRDPVYGCVGAISYLQNQVSQLQM 99 7***************************************************************************************** PP DUF260 93 elallkee 100 +la++++e Sp_190130_yqsr.t1 100 QLAVAQAE 107 **9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.936	7	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.4E-44	8	105	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MGGNGTSPCA SCKLLRRRCA KDCVFAPYFP SDDPHKFAIV HKVFGASNVS KMLQELPLHQ 60 RADAVSSLVY EANARMRDPV YGCVGAISYL QNQVSQLQMQ LAVAQAEILC IQMQPDSNNM 120 TTTPVHQNNN FEADDDNKSF LFHNNLSQHQ YLNFPSSTDH HVIQDSLKRE SFFGHDMVS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	7e-48	7	109	10	112	LOB family transfactor Ramosa2.1
5ly0_B	7e-48	7	109	10	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021855812.1	1e-133	LOB domain-containing protein 12-like
Swissprot	Q8LBW3	2e-77	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A0K9QFW0	1e-132	A0A0K9QFW0_SPIOL; Uncharacterized protein
STRING	XP_010692935.1	1e-116	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	6e-80	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]