PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_190370_eoqf.t1
Common NameSOVF_190370
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family C3H
Protein Properties Length: 516aa    MW: 57261.7 Da    PI: 6.3021
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_190370_eoqf.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.71.7e-1278101427
                        ---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                        + C+f+++tGtCk+G++C+F+H+p
  Sp_190370_eoqf.t1  78 VDCPFYLKTGTCKFGPNCRFNHPP 101
                        68********************97 PP
2zf-CCCH22.12.6e-07129150526
                        --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         C++f+  G CkyGd C+++H+
  Sp_190370_eoqf.t1 129 DCKYFRTPGGCKYGDGCRYNHS 150
                        7********************7 PP
3zf-CCCH32.51.5e-10173195426
                        ---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                         +C f++rtG C yG +C+F+H+
  Sp_190370_eoqf.t1 173 QECTFYLRTGSCGYGINCRFHHP 195
                        68********************9 PP
4zf-CCCH34.33.9e-11316341126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        ++++ C++f++tG Cky + C+++H+
  Sp_190370_eoqf.t1 316 PGQPDCDYFMKTGDCKYRSACRYNHP 341
                        5789*********************9 PP
5zf-CCCH25.72e-08397423127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        +++++C ff++tG Ck+ + C+++H++
  Sp_190370_eoqf.t1 397 PGQPECEFFMKTGNCKFKSACRYHHPR 423
                        5789*********************96 PP
6zf-CCCH27.84.3e-09444468226
                        -S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                        + ++Cr++   GtCkyG +C F+H+
  Sp_190370_eoqf.t1 444 GSKICRNYELQGTCKYGRNCLFHHP 468
                        5689********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.0E-674101IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.32474102IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-1078101IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-679102IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-580101IPR000571Zinc finger, CCCH-type
SMARTSM003560.036124151IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.136124152IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-5128150IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-5129153IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-5130151IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-5169196IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.493169197IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-6171197IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-8172195IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4175194IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-5315342IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.422315343IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-7317341IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.68E-5320343IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.821396424IPR000571Zinc finger, CCCH-type
SMARTSM003567.7E-5396423IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-6398423IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-5400425IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-6442469IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.633442470IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-6444468IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-6445468IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-6446467IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MGTCEEISSS IETQDEIKLG ISSSGTHCWD EQLTEEEEAL AQQFESVVLQ GNGVDVKIEG  60
GEEEEEKLHL YPLRPYAVDC PFYLKTGTCK FGPNCRFNHP PEKGFKIVLD QEEGIEVSNG  120
AFVDPGKIDC KYFRTPGGCK YGDGCRYNHS AQKVEREGPE LNFLGLPVRP SEQECTFYLR  180
TGSCGYGINC RFHHPDPTAM KEPESKNSLA NGVYARGGNN FPGMFVGEPL QSSGVSRGIP  240
DLANGLSSMN GLPYAGINTY HQSMPQNAGW NQDQVNLSMS AKKTPLPHQI VNFSKKTDPT  300
THYEQVMQSE EFPVRPGQPD CDYFMKTGDC KYRSACRYNH PVSRDSKLRL PLLSSKRPYS  360
KSKNPELPDS FAGNPRKSGA SSHQQQQLQN EQYPERPGQP ECEFFMKTGN CKFKSACRYH  420
HPRDRISTSS PSSLNESGLP LRPGSKICRN YELQGTCKYG RNCLFHHPDI SSSKSSVVPP  480
APVADQDHSS SNVVVATDLE FSAGNVDSDW GDGWAM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021859123.10.0zinc finger CCCH domain-containing protein 67-like
TrEMBLA0A0K9QFH90.0A0A0K9QFH9_SPIOL; Uncharacterized protein
STRINGXP_010674845.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.12e-65C3H family protein