PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_190450_tjmp.t2

Common Name

SOVF_190450

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

GRF

Protein Properties

Length: 586aa MW: 63247.8 Da PI: 7.4587

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_190450_tjmp.t2	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	79	4.4e-25	226	269	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e Sp_190450_tjmp.t2 226 DPEPGRCRRTDGKKWRCSRDAVPDQKYCERHINRGRHRSRKPVE 269 79***************************************998 PP
2	QLQ	63	7.6e-22	156	192	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT+aQ+ +L++Q+++yKyL an+PvP++Ll +i+k Sp_190450_tjmp.t2 156 GPFTPAQWIELEHQAMIYKYLTANVPVPHNLLIPIRK 192 59*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	1.2E-12	156	192	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	23.849	157	192	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	1.0E-15	157	191	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.954	226	270	IPR014977	WRC domain
Pfam	PF08879	3.9E-21	227	269	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009624	Biological Process	response to nematode
GO:0048364	Biological Process	root development
GO:0048366	Biological Process	leaf development
GO:0061062	Biological Process	regulation of nematode larval development
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 586 aa Download sequence Send to blast
MDFGLVGSVD SSEQQQILEG KPNGSGLLIK QERPDPFGDE DNNRAAKMVK RGQDLGLRSD 60 NNNVNVLPKQ QMLSFSSSNK PQQLSFLGSK DVGFIAADNN NNNNNNNNTN AQNLFLSYFQ 120 HQPPPPSAPN YSRTPAGFNP GNLNGNMHGS FTGIRGPFTP AQWIELEHQA MIYKYLTANV 180 PVPHNLLIPI RKALCSSVFP GFSIGSYPPH SYGWGAFHLG FSGNTDPEPG RCRRTDGKKW 240 RCSRDAVPDQ KYCERHINRG RHRSRKPVEG LTGQAASGPT NTKEVPAMSM PSSLVTSSGG 300 ASNSSTVTIA HHHHHVKPLQ PSGATNATTD SIVNRFHDEQ GLSVSVMPPP TTMNLKTNDT 360 SFSLDDSSQS EFGLVSTDSL LNPTQKSYNN SSSSSSILGF NSQQTQDQQY PLRHFMDVWP 420 KDNSTRSTIP WPEDLKSDWT QLSMSIPNQE NKTAVSPLRL SRELDPSETG LGLDETGMKQ 480 QNAWIPISWG NNNNNNNSMG GPLGEVLNNT SKNIMTSALN LKGSDQRCGG GGGGGSPQLG 540 SSPTGVLQKS TYVSLSNSSS AEGGASPCDD IFGLAAHASS TFVPSM

Sequence ? help Back to Top

Protein Sequence Length: 586 aa Download sequence Send to blast

MDFGLVGSVD SSEQQQILEG KPNGSGLLIK QERPDPFGDE DNNRAAKMVK RGQDLGLRSD  60
NNNVNVLPKQ QMLSFSSSNK PQQLSFLGSK DVGFIAADNN NNNNNNNNTN AQNLFLSYFQ  120
HQPPPPSAPN YSRTPAGFNP GNLNGNMHGS FTGIRGPFTP AQWIELEHQA MIYKYLTANV  180
PVPHNLLIPI RKALCSSVFP GFSIGSYPPH SYGWGAFHLG FSGNTDPEPG RCRRTDGKKW  240
RCSRDAVPDQ KYCERHINRG RHRSRKPVEG LTGQAASGPT NTKEVPAMSM PSSLVTSSGG  300
ASNSSTVTIA HHHHHVKPLQ PSGATNATTD SIVNRFHDEQ GLSVSVMPPP TTMNLKTNDT  360
SFSLDDSSQS EFGLVSTDSL LNPTQKSYNN SSSSSSILGF NSQQTQDQQY PLRHFMDVWP  420
KDNSTRSTIP WPEDLKSDWT QLSMSIPNQE NKTAVSPLRL SRELDPSETG LGLDETGMKQ  480
QNAWIPISWG NNNNNNNSMG GPLGEVLNNT SKNIMTSALN LKGSDQRCGG GGGGGSPQLG  540
SSPTGVLQKS TYVSLSNSSS AEGGASPCDD IFGLAAHASS TFVPSM

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. microRNA396-GRF1/GRF3 regulatory module acts as a developmental regulator in the reprogramming of root cells during cyst nematode infection, leading to the formation of the syncytium. {ECO:0000269\|PubMed:12974814, ECO:0000269\|PubMed:15326298, ECO:0000269\|PubMed:22419826, ECO:0000269\|PubMed:22751317}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). Up-regulated in response to cyst nematode infection. {ECO:0000269\|PubMed:15200956, ECO:0000269\|PubMed:19453503, ECO:0000269\|PubMed:20023165, ECO:0000269\|PubMed:22419826}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021837578.1	0.0	growth-regulating factor 1-like isoform X1
Refseq	XP_021839785.1	0.0	growth-regulating factor 1-like isoform X1
Swissprot	O81001	1e-102	GRF1_ARATH; Growth-regulating factor 1
TrEMBL	A0A0K9QDT8	0.0	A0A0K9QDT8_SPIOL; Uncharacterized protein
STRING	XP_010679671.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	1e-101	growth-regulating factor 1

Publications ? help Back to Top
Casadevall R,Rodriguez RE,Debernardi JM,Palatnik JF,Casati P Repression of growth regulating factors by the microRNA396 inhibits cell proliferation by UV-B radiation in Arabidopsis leaves. Plant Cell, 2013. 25(9): p. 3570-83 [PMID:24076976] Liu J,Rice JH,Chen N,Baum TJ,Hewezi T Synchronization of developmental processes and defense signaling by growth regulating transcription factors. PLoS ONE, 2014. 9(5): p. e98477 [PMID:24875638] Cao Y,Han Y,Jin Q,Lin Y,Cai Y Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa). Front Plant Sci, 2016. 7: p. 1750 [PMID:27933074]