PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_191110_wxrj.t1
Common NameSOVF_191110
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family Whirly
Protein Properties Length: 234aa    MW: 25842.4 Da    PI: 10.2491
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_191110_wxrj.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly1781.9e-55581951138
             Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrk 92 
                        svyk+kaal+ ++v +tf+++dsg +k+kr+G ++l + ++++erkydW++kq+fals+tev++l+ l+++ s +ffhdpa ++sn+G+vrk
  Sp_191110_wxrj.t1  58 SVYKGKAALSAHPVPATFSKVDSGGVKVKRQGYIMLSFSPCVGERKYDWQRKQVFALSVTEVGSLLTLGPNSSVDFFHDPAIQTSNAGQVRK 149
                        79****************************************************************************************** PP

             Whirly  93 alkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsll 138
                         l+++  ++G+G+f++++v n+++k+ne+f+vPv+ aefav+r+ +
  Sp_191110_wxrj.t1 150 GLSIKANSEGTGYFFSINVANNITKVNERFTVPVTSAEFAVMRTSF 195
                        *******************************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.104.7E-6846211IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544473.77E-5851213IPR009044ssDNA-binding transcriptional regulator
PfamPF085362.8E-5459193IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MMKLATIFKS RGNVSGQFLN WSNPTQDVFS LHALMSRASM STVGQKGNNA DRIYAAYSVY  60
KGKAALSAHP VPATFSKVDS GGVKVKRQGY IMLSFSPCVG ERKYDWQRKQ VFALSVTEVG  120
SLLTLGPNSS VDFFHDPAIQ TSNAGQVRKG LSIKANSEGT GYFFSINVAN NITKVNERFT  180
VPVTSAEFAV MRTSFSSVLP HIMGWDRYSY QPPVLKEENS VKVGMRSLDS EWDR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3n1h_A9e-78432121170StWhy2
3n1i_A9e-78432121170protein StWhy2
3n1j_A9e-78432121170Protein StWhy2
3n1k_A9e-78432121170protein StWhy2
3n1l_A9e-78432121170protein StWhy2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021856858.11e-175single-stranded DNA-bindig protein WHY2, mitochondrial
SwissprotD9J0344e-82WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLA0A0K9QDK61e-174A0A0K9QDK6_SPIOL; Uncharacterized protein
STRINGXP_010677192.11e-119(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.19e-71WHIRLY 2