PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_192040_qkqw.t1

Common Name

SOVF_192040

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

SBP

Protein Properties

Length: 989aa MW: 109671 Da PI: 7.5829

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_192040_qkqw.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.8	4.8e-41	146	221	1	76
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +CqvegC+adls+ak+yhrrhkvCevhska+++lv ++ qrfCqqCsrfh+l+efDe+krsCrrrLa+hn+rrrk+ Sp_192040_qkqw.t1 146 ACQVEGCSADLSTAKDYHRRHKVCEVHSKATEALVGNVVQRFCQQCSRFHSLQEFDEGKRSCRRRLAGHNKRRRKT 221 5*************************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	8.7E-34	140	208	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.616	144	221	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.44E-37	145	223	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	4.3E-30	147	220	IPR004333	Transcription factor, SBP-box
SMART	SM00248	110	758	787	IPR002110	Ankyrin repeat
SuperFamily	SSF48403	4.84E-10	759	876	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	9.2E-9	760	874	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.25E-10	763	874	No hit	No description
PROSITE profile	PS50088	8.683	815	838	IPR002110	Ankyrin repeat
SMART	SM00248	1.4	815	845	IPR002110	Ankyrin repeat
PROSITE profile	PS50297	8.587	815	838	IPR020683	Ankyrin repeat-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 989 aa Download sequence Send to blast
MEAEIGGKAN IFGVVVADQK TVGKRTLEWD LNDWKWDGDL FTASPLNSTP LDCRSKQLFP 60 LGPELVANTN VCSKEINKTN EKGKREMEKR RRGVVVPEEE LNDEARPLNL KLGEQVYPIA 120 EGEADKLEGK TVKKSKPTGT GSSQPACQVE GCSADLSTAK DYHRRHKVCE VHSKATEALV 180 GNVVQRFCQQ CSRFHSLQEF DEGKRSCRRR LAGHNKRRRK TLSETSPNVG SLADEKSAGY 240 LLVSLLRILS NSHTHASDES KNQDLIYHLV RNLASQVSGS NMPELQQGSQ SLLNGGISVG 300 IPQKNPSSMQ EPCLAVPSAA AHIGLLTREN RHVTEHTQYA SLPGILHQAG GSVPSKGNEP 360 EAYLKRHGLS GIDLNNVYDD SQERIDIPEK GHGPVACAFR PERLQKSSPP QTSRNSDSTS 420 GHSSSSGSEI QGRTDRIVFK LFGKDPNDLP HQLRTQILDW LSHSPTDIEG YIRPGCIVLT 480 IYLRLNKSSW EELCYDMSSS LSRLLSLSDH PFWKTGWIYT RVQQRAAFIC DGRVVLDTPL 540 PFKSRRSRIS SISPIAVPAD ETVQIVVKGC NLSGPTSRLL CAIEGKYLVQ ESCYSLEGIS 600 TNTAAEQDEI QSLSFHCSIP NVVGRGFIEV EDYGLSGCFF PIIVAEPEIC SEICMLESVM 660 EAVGTDEDIN RKCGTTDGRN DALDFIHEMG WLLHRNHLSI KAGQTDLPLD LFPFVRLKRL 720 IEFSMDHDWC AVLRKLLDLM FSGTVDTGNH ASVEHALSEM PLLHTAVQRN SRPMVDFLLR 780 YMPNKVKGTI GFEQKQSDYG TPSTYLFRPD VTGSNGLTPL HIAASCAGFE NMLDALLEDP 840 GMIGIGAWEN ARDSTGLTPK DYARLRGHNH YMDLFQRKLN KTSSGKHVVV DIVGLTNIES 900 KQKQSDKVKS AKLNSLYTEM WQVRQKCKLC EQKPNYGSRG TSLAFRPAVM SLVAIAVVCV 960 CTALFFKSMP QVCCVFGPFR WEALKYGAM

Sequence ? help Back to Top

Protein Sequence Length: 989 aa Download sequence Send to blast

MEAEIGGKAN IFGVVVADQK TVGKRTLEWD LNDWKWDGDL FTASPLNSTP LDCRSKQLFP  60
LGPELVANTN VCSKEINKTN EKGKREMEKR RRGVVVPEEE LNDEARPLNL KLGEQVYPIA  120
EGEADKLEGK TVKKSKPTGT GSSQPACQVE GCSADLSTAK DYHRRHKVCE VHSKATEALV  180
GNVVQRFCQQ CSRFHSLQEF DEGKRSCRRR LAGHNKRRRK TLSETSPNVG SLADEKSAGY  240
LLVSLLRILS NSHTHASDES KNQDLIYHLV RNLASQVSGS NMPELQQGSQ SLLNGGISVG  300
IPQKNPSSMQ EPCLAVPSAA AHIGLLTREN RHVTEHTQYA SLPGILHQAG GSVPSKGNEP  360
EAYLKRHGLS GIDLNNVYDD SQERIDIPEK GHGPVACAFR PERLQKSSPP QTSRNSDSTS  420
GHSSSSGSEI QGRTDRIVFK LFGKDPNDLP HQLRTQILDW LSHSPTDIEG YIRPGCIVLT  480
IYLRLNKSSW EELCYDMSSS LSRLLSLSDH PFWKTGWIYT RVQQRAAFIC DGRVVLDTPL  540
PFKSRRSRIS SISPIAVPAD ETVQIVVKGC NLSGPTSRLL CAIEGKYLVQ ESCYSLEGIS  600
TNTAAEQDEI QSLSFHCSIP NVVGRGFIEV EDYGLSGCFF PIIVAEPEIC SEICMLESVM  660
EAVGTDEDIN RKCGTTDGRN DALDFIHEMG WLLHRNHLSI KAGQTDLPLD LFPFVRLKRL  720
IEFSMDHDWC AVLRKLLDLM FSGTVDTGNH ASVEHALSEM PLLHTAVQRN SRPMVDFLLR  780
YMPNKVKGTI GFEQKQSDYG TPSTYLFRPD VTGSNGLTPL HIAASCAGFE NMLDALLEDP  840
GMIGIGAWEN ARDSTGLTPK DYARLRGHNH YMDLFQRKLN KTSSGKHVVV DIVGLTNIES  900
KQKQSDKVKS AKLNSLYTEM WQVRQKCKLC EQKPNYGSRG TSLAFRPAVM SLVAIAVVCV  960
CTALFFKSMP QVCCVFGPFR WEALKYGAM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	3e-31	147	220	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021836165.1	0.0	squamosa promoter-binding-like protein 1
Refseq	XP_021836166.1	0.0	squamosa promoter-binding-like protein 1
Refseq	XP_021836167.1	0.0	squamosa promoter-binding-like protein 1
TrEMBL	A0A0K9QFD7	0.0	A0A0K9QFD7_SPIOL; Uncharacterized protein
STRING	XP_010672614.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60030.1	0.0	squamosa promoter-binding protein-like 12