PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_193710_noer.t1
Common NameSOVF_193710
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family C2H2
Protein Properties Length: 522aa    MW: 58741.8 Da    PI: 7.9957
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_193710_noer.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.000711234123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ++C+ C+k++++  +L  H+r+H
  Sp_193710_noer.t1 12 HPCKLCNKRYPSGKSLGGHMRSH 34
                       78********************9 PP
2zf-C2H214.79.2e-05436458123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        +kCp+C+++F++   L  H r+H
  Sp_193710_noer.t1 436 HKCPYCPRVFKSGQALGGHKRSH 458
                        79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.16E-81234No hitNo description
PfamPF139121.7E-91234IPR007087Zinc finger, C2H2
SMARTSM003550.031234IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.8081234IPR007087Zinc finger, C2H2
PROSITE patternPS0002801434IPR007087Zinc finger, C2H2
SuperFamilySSF576679.16E-8120147No hitNo description
PROSITE profilePS5015710.076125152IPR007087Zinc finger, C2H2
SMARTSM003550.099125147IPR015880Zinc finger, C2H2-like
PfamPF139124.6E-6126149IPR007087Zinc finger, C2H2
PROSITE patternPS000280127147IPR007087Zinc finger, C2H2
PfamPF139129.6E-11436459IPR007087Zinc finger, C2H2
PROSITE profilePS501579.349436458IPR007087Zinc finger, C2H2
SMARTSM003550.011436458IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280438458IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MEEKRDEEEL KHPCKLCNKR YPSGKSLGGH MRSHVISNRN RQPIPIPIAI PKFDVYDDED  60
DEDEEEDEFG LGNGHGNGSE GGKISGYGLR ENPKKTWRLV DSTIHTKHQQ QLNQFQQERE  120
RERERVCKQC GKGFHSLKAL CGHMSSHSEK ERNFKDEEDD EDDDNSWSSD SKDQLILTME  180
SHSDNNNKSM SKRRTRSSLL RYRSLTPSTT TIGGCYGGGG GGSSSNHSEI DQHEQEEVAI  240
CLMMLSRDSS GITKKSCFNF TAESSDNNSV ILEGGSSTNH LGIFKIKGTN HDKNKVIKQA  300
EKKINVTNHE IMDNSDSGYF ENGAKELESD DSVDGFNDGS RKRKIREGLV GDYSRFDTNP  360
ESDENSSKKK KKNKMMIKQD YYGNTSIIIK GGKYQALDNT NTVITNNNNN TKINAKNKNL  420
VAASTTSSKS KKVKGHKCPY CPRVFKSGQA LGGHKRSHMM GAANRNMNLN TGEKSKVERP  480
PPPPRQQHQH QHQHQHQHQP PLIDLNLPAP IEEEGNSQFV AW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021859497.10.0suppressor of Mek1-like
TrEMBLA0A0K9QEW20.0A0A0K9QEW2_SPIOL; Uncharacterized protein
STRINGXP_010680727.11e-160(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.11e-31C2H2-like zinc finger protein