PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_193850_gdnh.t1
Common NameSOVF_193850
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family B3
Protein Properties Length: 295aa    MW: 33174 Da    PI: 4.5904
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_193850_gdnh.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.73.6e-121952791398
                        TT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEEE- CS
                 B3  13 sgrlvlpkkfaeehggkkeesktltledesg.rsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkvfr 98 
                        +++l lp +f+ ++  +  +   + +  ++g +sWe+ +    k  ++  + + W+ Fv++n+L+ gD++vF+l+  + ++ + +v+++r
  Sp_193850_gdnh.t1 195 TCLLALPIHFT-RILPN--K--RVPVILTHGpKSWEMAYHGdAKEVKHKRFDTRWRVFVEDNKLNIGDVCVFELMeCNhTSLNIKVQIRR 279
                        68889999998.45322..2..2444455566*******55433333377999********************88667788888888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.14E-12176273IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.0E-13176278IPR015300DNA-binding pseudobarrel domain
CDDcd100172.74E-12185279No hitNo description
SMARTSM010194.1E-5193281IPR003340B3 DNA binding domain
PfamPF023626.9E-10196279IPR003340B3 DNA binding domain
PROSITE profilePS508639.178198281IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MLMMYEHFPV REMNGEPQPM TDNDQASKHK HEHEHEDKVI DESEPEPQGV VPTDSCLQED  60
VDIESLSGKH FCHVILDKSM SKNDQASKHE PQAQVEVVPT DSCLQDDHDV DIGPQPLTKN  120
DQASKPEPEP EPEPEPEPEA IHESEPQAEA EVEVVLPTDS CLQEDDDVEV ESLSGKPVCH  180
VSLGKSHLGR GATCTCLLAL PIHFTRILPN KRVPVILTHG PKSWEMAYHG DAKEVKHKRF  240
DTRWRVFVED NKLNIGDVCV FELMECNHTS LNIKVQIRRG DFPSQLSTIT HYGPG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021858973.10.0uncharacterized protein LOC110798132
TrEMBLA0A0K9QCT30.0A0A0K9QCT3_SPIOL; Uncharacterized protein