PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_194070_jgjf.t1
Common NameSOVF_194070
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family YABBY
Protein Properties Length: 145aa    MW: 15740.2 Da    PI: 8.9852
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_194070_jgjf.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY94.62.4e-29151453134
              YABBY   3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee..lleelkveeenlksnvekeesa 92 
                        ++  +++vCyv+Cn Cnt+lav +P + l++++tv+CGhC ++  ++ +    l+a+     +++         l+ ++ n+ +++ +++++
  Sp_194070_jgjf.t1  15 LNAGPDHVCYVRCNLCNTVLAVVIPCKRLLETITVKCGHCGNVSFLSTRPLPPLTATATATATATATAtpTPTPLQPQGFNFLEKTCSSDAN 106
                        66789************************************997777776665554444433333333114555555555555555555555 PP

              YABBY  93 stsvsseklsenedeevprvppvirPPekrqrvPsaynrfik 134
                        ++s s+++    +d ++p  p v +PPek+ r Psaynrf+k
  Sp_194070_jgjf.t1 107 HSSSSNST--LTNDPHSP-SPFVCKPPEKKHRLPSAYNRFMK 145
                        44444444..44455555.4679*****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.5E-3019145IPR006780YABBY protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MMNRKMMEGK MSMELNAGPD HVCYVRCNLC NTVLAVVIPC KRLLETITVK CGHCGNVSFL  60
STRPLPPLTA TATATATATA TATPTPTPLQ PQGFNFLEKT CSSDANHSSS SNSTLTNDPH  120
SPSPFVCKPP EKKHRLPSAY NRFMK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021839670.12e-66protein CRABS CLAW
TrEMBLA0A0K9QCR11e-102A0A0K9QCR1_SPIOL; Uncharacterized protein
STRINGXP_010680651.13e-46(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.18e-19YABBY family protein