PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_194400_fdur.t1
Common NameSOVF_194400
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family LBD
Protein Properties Length: 177aa    MW: 18815.1 Da    PI: 4.7579
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_194400_fdur.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26032.13.2e-102415897
             DUF260 58 msslvyeAearardPvyGavgvilklqqqleqlkaelall 97
                       ++sl+yeA+ r+ dP++G+vg++ ++q++ +ql+++++l 
  Sp_194400_fdur.t1  2 FQSLLYEACGRVVDPIHGSVGLLYSGQWHHCQLAVDAVLK 41
                       89*******************************9998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031953.0E-6238IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
IFQSLLYEAC GRVVDPIHGS VGLLYSGQWH HCQLAVDAVL KGLPIMQISP SSDLITSSDG  60
PPHQILLPPI KLYDIRHMSS SKDSPTLPTL LVPTGPRLKR RPRVPAFDSD QLSTINGGGG  120
GGGVDDNEEG EDNQSIEKLS IFSGESTEGS VAGGMGDSEV QLDLTLGFNR YGKCATN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196102RLKRRPR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021856656.11e-126LOB domain-containing protein 41-like
TrEMBLA0A0K9QCK01e-125A0A0K9QCK0_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010668215.11e-46(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.17e-25LOB domain-containing protein 41