PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_194940_gwyc.t1
Common NameSOVF_194940
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family LBD
Protein Properties Length: 133aa    MW: 14550 Da    PI: 8.4914
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_194940_gwyc.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260137.83.8e-43191181100
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                        +CaaCk+lrr+Ca++Cvlapyfp ++p kf ++h++FGasn++k+l++lpe++r da+ss+vyeA+ar+rdPvyG++g i +lq+q++ l+a
  Sp_194940_gwyc.t1  19 PCAACKILRRRCADKCVLAPYFPPTEPLKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEANARIRDPVYGCAGSICQLQKQVNDLQA 110
                        7******************************************************************************************* PP

             DUF260  93 elallkee 100
                        +la++++ 
  Sp_194940_gwyc.t1 111 QLAKAQAD 118
                        ***99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.04918119IPR004883Lateral organ boundaries, LOB
PfamPF031952.6E-4319116IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MTTESVSLSS QPPTVVVSPC AACKILRRRC ADKCVLAPYF PPTEPLKFTI AHRVFGASNI  60
IKFLQELPES QRADAVSSMV YEANARIRDP VYGCAGSICQ LQKQVNDLQA QLAKAQADLL  120
NIKCQQTNLL ALI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-441812610118LOB family transfactor Ramosa2.1
5ly0_B2e-441812610118LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021837316.12e-93LOB domain-containing protein 1-like
SwissprotQ9LQR03e-68LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A0K9QCG23e-92A0A0K9QCG2_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010666030.19e-77(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.11e-61LOB domain-containing protein 1