PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_194990_zjfn.t2
Common NameSOVF_194990
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family NF-YB
Protein Properties Length: 171aa    MW: 18631.8 Da    PI: 5.835
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_194990_zjfn.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB186.22.4e-5824121198
              NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 
                        vreqdr+lPian+srimk++lPan+ki+kdaketvqecvsefisf+tseasdkcqrekrktingddllwa+atlGfe+y++plkvyl++yre
  Sp_194990_zjfn.t2  24 VREQDRYLPIANISRIMKRALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEEYIDPLKVYLTRYRE 115
                        69****************************************************************************************** PP

              NF-YB  93 legekk 98 
                        +eg++k
  Sp_194990_zjfn.t2 116 MEGDTK 121
                        ***975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.3E-5519135IPR009072Histone-fold
SuperFamilySSF471132.33E-4027131IPR009072Histone-fold
PfamPF008087.3E-283094IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006158.4E-215876No hitNo description
PROSITE patternPS0068506177IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006158.4E-217795No hitNo description
PRINTSPR006158.4E-2196114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MAEAPTSPGG GSPESGDQSP RSNVREQDRY LPIANISRIM KRALPANGKI AKDAKETVQE  60
CVSEFISFIT SEASDKCQRE KRKTINGDDL LWAMATLGFE EYIDPLKVYL TRYREMEGDT  120
KGSAKGGEAS GKRDSMGGQP PQLAHQGSFS QAMNYGNSSA QHLMVPMQGP E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_B5e-4823115294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A5e-4823115294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021847394.11e-126nuclear transcription factor Y subunit B-10-like
SwissprotQ8VYK47e-86NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLA0A0K9QCE11e-124A0A0K9QCE1_SPIOL; Uncharacterized protein
STRINGXP_010667231.11e-110(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53340.15e-76nuclear factor Y, subunit B10
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]