PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_195360_idtw.t1
Common NameSOVF_195360
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family M-type_MADS
Protein Properties Length: 216aa    MW: 24408.9 Da    PI: 9.7408
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_195360_idtw.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.82.5e-221663249
                       ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
             SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                       ri+n s rqvtfskRr g++KKA+E+++LC++e+ +i+fs+ +k++ +
  Sp_195360_idtw.t1 16 RIKNPSHRQVTFSKRRLGLFKKASEICTLCGVEAIIIVFSPGQKIFSF 63
                       8******************************************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.296767IPR002100Transcription factor, MADS-box
SMARTSM004326.3E-29766IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.62E-26882IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-17929IPR002100Transcription factor, MADS-box
PfamPF003197.8E-231663IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-172944IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-174465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009559Biological Processembryo sac central cell differentiation
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MAKKESKGRQ KIKMARIKNP SHRQVTFSKR RLGLFKKASE ICTLCGVEAI IIVFSPGQKI  60
FSFGYPDVES IVNRYLSRNT ISPRDEGVGG EQSCSMRELN SQLTKILDLL EAEKVRGEVF  120
NNLKGKPNQW WWEAPIDNLG LHELQVLSAS MEDLKKNIAN QAMFLEKTNA SSSGLSMDNN  180
SGVSDQHFDL KSIEAKIEGF ARPDHQFANF HSQKMF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A1e-14879172Myocyte-specific enhancer factor 2A
3kov_B1e-14879172Myocyte-specific enhancer factor 2A
3kov_I1e-14879172Myocyte-specific enhancer factor 2A
3kov_J1e-14879172Myocyte-specific enhancer factor 2A
3p57_A1e-14879172Myocyte-specific enhancer factor 2A
3p57_B1e-14879172Myocyte-specific enhancer factor 2A
3p57_C1e-14879172Myocyte-specific enhancer factor 2A
3p57_D1e-14879172Myocyte-specific enhancer factor 2A
3p57_I1e-14879172Myocyte-specific enhancer factor 2A
3p57_J1e-14879172Myocyte-specific enhancer factor 2A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021850496.11e-161agamous-like MADS-box protein AGL61
TrEMBLA0A0K9QCA51e-159A0A0K9QCA5_SPIOL; Uncharacterized protein
STRINGXP_010692431.11e-113(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-48AGAMOUS-like 61