PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_196040_azyd.t1
Common NameSOVF_196040
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family B3
Protein Properties Length: 227aa    MW: 25741.5 Da    PI: 10.0659
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_196040_azyd.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.29.2e-16128215499
                        E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                 B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                         ++ps+v+   +l lp +f+++   + +++ t+tl de+g ++   +  rk++    l++GW++F+ a++L +gD+vvF+++++s f  +v 
  Sp_196040_azyd.t1 128 PMLPSHVTGCFWLGLPSEFCRTRL-P-NNDATVTLVDEEGDEYPSVYLARKTG----LSGGWRGFALAHELVDGDTVVFQVISHSIF--KVY 211
                        6889****************7773.3.46679***************656665....***********************9998999..999 PP

                        EE-S CS
                 B3  96 vfrk 99 
                        ++r+
  Sp_196040_azyd.t1 212 IIRR 215
                        9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-21121216IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-17122216IPR015300DNA-binding pseudobarrel domain
CDDcd100171.24E-21123214No hitNo description
SMARTSM010191.5E-19125216IPR003340B3 DNA binding domain
PROSITE profilePS5086311.758125216IPR003340B3 DNA binding domain
PfamPF023626.7E-14129215IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MGKVSYEERR QKRVEENKKR LDDLNLTHLS QALKNLSPKS SPIKKVWKPR TVENRMVAVR  60
RSARVAKHPA PVYIQVHLPR SSSPRKSYGV VRGNYGVARD EERASTIEKA EKLVGKLEEE  120
GFPTVIRPML PSHVTGCFWL GLPSEFCRTR LPNNDATVTL VDEEGDEYPS VYLARKTGLS  180
GGWRGFALAH ELVDGDTVVF QVISHSIFKV YIIRRSDELN KVLTSED
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021847198.11e-168B3 domain-containing protein At5g42700-like isoform X1
TrEMBLA0A0K9QC351e-166A0A0K9QC35_SPIOL; Uncharacterized protein
STRINGXP_010667517.11e-112(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.18e-57B3 family protein