PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_196050_qian.t1
Common NameSOVF_196050
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 260aa    MW: 28312.8 Da    PI: 9.8236
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_196050_qian.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.21.4e-08150190954
                        HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Sp_196050_qian.t1 150 ARHRRERISEKIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 190
                        699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.294141190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-13142199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.94E-11143195No hitNo description
SuperFamilySSF474593.79E-14145200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13147196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.8E-6151190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0048462Biological Processcarpel formation
GO:0080126Biological Processovary septum development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MDIDLLKSTS DEQIEMMLMT MHMGKATASG NSGGGSPPYA DTSAMMSFNG VPQHFNSPTF  60
FNTPQTTISF TTNNNSNNNN SNNNSVPNLL PSYRDENGAS IPQKQTSMAA MREMIFRIAA  120
MQPIYIDPEA VKPPKRRNVR ISKDPQSVAA RHRRERISEK IRILQRLVPG GTKMDTASML  180
DEAIHYVKFL KGQVQSLERV AINNHHHRPG GGGQPQPPVS ATGIGFPVPV SGGGGGGYSY  240
HPLHMNAAPH NVQQFSDSDA
Functional Description ? help Back to Top
Source Description
UniProtRequired for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021839700.10.0transcription factor HEC1-like
RefseqXP_021839701.10.0transcription factor HEC1-like
SwissprotQ9SND42e-47HEC2_ARATH; Transcription factor HEC2
TrEMBLA0A0K9QE730.0A0A0K9QE73_SPIOL; Uncharacterized protein
STRINGXP_010688854.14e-84(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.14e-49bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhu L, et al.
    A Negative Feedback Loop between PHYTOCHROME INTERACTING FACTORs and HECATE Proteins Fine-Tunes Photomorphogenesis in Arabidopsis.
    Plant Cell, 2016. 28(4): p. 855-74
    [PMID:27073231]