PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_197080_wmsc.t1
Common NameSOVF_197080
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 90aa    MW: 10362.7 Da    PI: 9.3615
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_197080_wmsc.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.52.3e-0821581855
                       HHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                HLH 18 safeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                       +  ++L++l+P+ + + +s K+s + +L+++++YI++Lq
  Sp_197080_wmsc.t1 21 QLVSKLQQLVPEvR-QRRSDKVSASKVLQETCNYIRNLQ 58
                       55689*******65.9**********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.499357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.22E-81875IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-81972IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.8E-62158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MSSRRSRQSG SSRISDDQII QLVSKLQQLV PEVRQRRSDK VSASKVLQET CNYIRNLQRE  60
MDDLSDRLSQ LLTTVDADSE EARIIRSLLN
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021861076.12e-55transcription factor PRE6-like
SwissprotQ9LJX16e-38PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A0K9QDA75e-54A0A0K9QDA7_SPIOL; Uncharacterized protein
STRINGXP_010693223.13e-45(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.12e-34bHLH family protein