PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_197960_xono.t1
Common NameSOVF_197960
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family C3H
Protein Properties Length: 139aa    MW: 15745.8 Da    PI: 9.9179
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_197960_xono.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.86.6e-123863126
                       --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                       ++++ C++f++tG Cky + C+++H+
  Sp_197960_xono.t1 38 PGQPDCDYFMKTGDCKYRSACRYNHP 63
                       5789*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.4223765IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-53764IPR000571Zinc finger, CCCH-type
PfamPF006427.5E-83963IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-54265IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-44363IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.118127139IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MSAKKTPLPH QIVNFSKKTD PTTHYEQVMQ SEEFPVRPGQ PDCDYFMKTG DCKYRSACRY  60
NHPVSRDSKL RLPLLSSKGL YSKSKNPELP DSFTGNPRKS GASYHHPRDR ISTSSPSSLN  120
ESGLPLRPGS KICRNYELQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021859123.16e-84zinc finger CCCH domain-containing protein 67-like
TrEMBLA0A0K9QDN46e-98A0A0K9QDN4_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010674845.15e-66(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.12e-16C3H family protein