PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_198160_ezpe.t1
Common NameSOVF_198160
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family GRAS
Protein Properties Length: 462aa    MW: 51699.7 Da    PI: 5.4053
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_198160_ezpe.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS413.42.1e-126864471374
               GRAS   1 lvelLlecAeavssgdlelaqalLarlsel...aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                        lv++Ll+cA+ v+ gd++la++l+ ++++    + +++  + ++a yf+ AL++rl++      + l++  t + ++s+e   ++ f+e++P
  Sp_198160_ezpe.t1  86 LVHALLTCADSVQRGDFRLANSLIGQMNNVlltRVNTACGIGKVAGYFVDALSRRLYQ------SNLRMGLTGPGSVSNE-VLYHHFYEACP 170
                        689*************************9876566666799*****************......5555555555455555.56689****** PP

               GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.skeeleetgerLakfAeelgvpfefnv 180
                        +lkf+h+taNqaIlea+eg+  vH+iDf++++GlQWpaL+qaLa Rp+gppslR+T+++++ ++ +++  +etg rLa++A++++v+f+f+v
  Sp_198160_ezpe.t1 171 YLKFAHFTANQAILEAFEGQAYVHVIDFSLMHGLQWPALIQALALRPGGPPSLRLTAISPSITSnEHDFFQETGLRLAQLARSINVRFSFQV 262
                        ***********************************************************9776679999*********************** PP

               GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272
                        +++++le +++++++++p+E++aVn++lqlhrll      + ++d vL+ ++sl+Pk+++vveq+++hn+++Fl rf+eal+yys++fdsle
  Sp_198160_ezpe.t1 263 VTTSQLEVIKPWMFQTSPEEVIAVNSILQLHRLL------NTNIDPVLESIRSLNPKIFTVVEQDTNHNQPEFLIRFTEALHYYSSMFDSLE 348
                        *********************************9......333588*********************************************9 PP

               GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkd 364
                        a    + e+ ++v +++++rei+n+v+ceg++r+erhe l+kWr rl++aGFkp++++++a kqa +ll  ++++gy+v+e++g+l lgW++
  Sp_198160_ezpe.t1 349 AC---QLEASKSVAEKYMQREICNIVCCEGSARVERHEPLAKWRYRLSRAGFKPLHMGHNAFKQATMLLTLCSGQGYSVQESDGCLSLGWHN 437
                        98...568888899999*************************************************************************** PP

               GRAS 365 rpLvsvSaWr 374
                        rpL+++SaW+
  Sp_198160_ezpe.t1 438 RPLIAASAWQ 447
                        *********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.85260427IPR005202Transcription factor GRAS
PfamPF035147.2E-12486447IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MESYMDELLG DDDRVMPWAN TFDPELGSIP ILRPRSGPGL TFIDPVPNEL MKVIGDTWTD  60
QFGEEQPSGD SQSPVYDVEE DMGIRLVHAL LTCADSVQRG DFRLANSLIG QMNNVLLTRV  120
NTACGIGKVA GYFVDALSRR LYQSNLRMGL TGPGSVSNEV LYHHFYEACP YLKFAHFTAN  180
QAILEAFEGQ AYVHVIDFSL MHGLQWPALI QALALRPGGP PSLRLTAISP SITSNEHDFF  240
QETGLRLAQL ARSINVRFSF QVVTTSQLEV IKPWMFQTSP EEVIAVNSIL QLHRLLNTNI  300
DPVLESIRSL NPKIFTVVEQ DTNHNQPEFL IRFTEALHYY SSMFDSLEAC QLEASKSVAE  360
KYMQREICNI VCCEGSARVE RHEPLAKWRY RLSRAGFKPL HMGHNAFKQA TMLLTLCSGQ  420
GYSVQESDGC LSLGWHNRPL IAASAWQMRN DNDGSTSSSS SV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-599345026382Protein SCARECROW
5b3h_A2e-599345025381Protein SCARECROW
5b3h_D2e-599345025381Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021764513.10.0DELLA protein GAI1-like
SwissprotQ8S4W71e-131GAI1_VITVI; DELLA protein GAI1
TrEMBLA0A0K9QD550.0A0A0K9QD55_SPIOL; Uncharacterized protein
STRINGXP_010688103.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.11e-132GRAS family protein